|
Name : kdsB (NTHI0068) Accession : YP_247721.1 Strain : Haemophilus influenzae 86-028NP Genome accession: NC_007146 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 60867 - 61631 bp Length : 765 bp Strand : - Note : CMP-KDO synthetase; CMP-2-keto-3-deoxyoctulosonic acid synthetase; CKS; CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : ATGTCATTTACCGTTATTATCCCCGCTCGTTTTGCATCAAGTCGTTTACCTGGAAAACCGCTTGCCGATATTGCAGGTAA GCCAATGATTCAACATGTATTTGAGAAAGCGCTGCAGTCTGGGGCGAACCGAGTGATTATTGCCACCGATAATGAAAATG TGGCTGATGTTGCCAAAAATTTTGGCGCGGAAGTGTGCATGACTTCGGTTAATCATAATTCTGGTACAGAACGTTTAGCG GAAGTTGTAGAAAAATTAGCGATTCCTGACAATGAAATCATTGTCAATATTCAAGGCGATGAGCCTTTGATTCCTCCCGT TATCGTGCGACAAGTGGCAGATAATTTAGCAAAATTTAATGTCAATATGGCAAGTCTTGCGGTAAAAATTCATGATGCTG AGGAATTATTCAATCCAAATGCAGTGAAAGTTTTGACGGATAAAGACGGCTATGTGCTATATTTTTCCCGTTCGGTTATT CCTTACGATCGTGATCAGTTTATGAATTTACAGGATGTTCAGAAAGTACAGCTTGCGGACGCTTACTTACGTCATATTGG CATTTACGCATATCGTGCGGGGTTCATAAAACAATATGTGCAATGGGCTCCGACTCAACTTGAAAATCTAGAAAAACTTG AGCAGCTTCGTGTGTTATATAACGGCGAACGCATTCACGTAGAGCTTGCGAAAGAAGTGCCTGCAGTGGGGGTGGATACT GCTGAAGATTTGGAAAAAGTGCGGGCAATTTTAGCGGCGAATTAA Protein sequence : MSFTVIIPARFASSRLPGKPLADIAGKPMIQHVFEKALQSGANRVIIATDNENVADVAKNFGAEVCMTSVNHNSGTERLA EVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVI PYDRDQFMNLQDVQKVQLADAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDT AEDLEKVRAILAAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 2e-39 | 44 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 8e-40 | 44 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 1e-39 | 44 |
