Gene Information

Name : hfeD (NTHI0477)
Accession : YP_248074.1
Strain : Haemophilus influenzae 86-028NP
Genome accession: NC_007146
Putative virulence/resistance : Virulence
Product : ABC-type chelated iron transport system, permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 452169 - 452984 bp
Length : 816 bp
Strand : -
Note : Similar to: HI0359, Y359_HAEIN

DNA sequence : 
ATGTTTGATTGGCTTTTAGAACCGCTACAATTTGAGTTTATGCAAAATGCCTTATTGACCGCATTGATTGTTTCGATTAT
CTGTGCGTTACTTTCTTGCTATTTAGTCTTGAAAGGTTGGTCATTAATGGGTGATGCAATTTCTCACGCTGTATTACCTG
GTATTGTACTTGCTTATTTGGCAGGAATTCCTTTAGCCATTGGTGCATTTTTCTCAGGTATTTTTTGTTCGCTTGGTGTG
GGATATTTGAAAGAAAATAGCCGTATAAAAGAAGATACAGCAATGGGTATTGTATTTTCTGGAATGTTTGCTATTGGTTT
GGTTATGTTTACCAAAATTCAAACAGAACAGCATTTAACCCATATTTTGTTTGGTAATGTGTTGGGTGTAAGTCATCAAG
AGCTGATTCAAAGTGCGGTCATTTCTGCGATAATTTTTTGTTTGATTGTTTTCAAACGTAAAGACTTTCTGCTTTATTGT
TTTGATCCAAGTCACGCCCGTGTTGCAGGACTTTCTCCAAAAGTTTTACATTATGGCTTGCTAATATTACTTGCTTTAAC
CATTGTAAGCACGATGCAAGTGGTAGGTGTTATTTTGGTGGTGGCAATGTTAATTGCACCAGGAATTACCGCACTTACGC
TTACCAAATCTTTTGATAAAATGTTATGGGTTGCTATTGCAAGTTCCATTGCATCAAGCCTAATTGGCGTAATATTGAGC
TATCATTTTGATGCCTCAACAGGTGCTTGTATCATTCTTCTGCAAGCTGCATTTTTTGTTATAGCATTAGCTTATAGCAA
AATTAGAACAAGATAA

Protein sequence : 
MFDWLLEPLQFEFMQNALLTALIVSIICALLSCYLVLKGWSLMGDAISHAVLPGIVLAYLAGIPLAIGAFFSGIFCSLGV
GYLKENSRIKEDTAMGIVFSGMFAIGLVMFTKIQTEQHLTHILFGNVLGVSHQELIQSAVISAIIFCLIVFKRKDFLLYC
FDPSHARVAGLSPKVLHYGLLILLALTIVSTMQVVGVILVVAMLIAPGITALTLTKSFDKMLWVAIASSIASSLIGVILS
YHFDASTGACIILLQAAFFVIALAYSKIRTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-64 55
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-64 55
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-63 54
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-63 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-63 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hfeD YP_248074.1 ABC-type chelated iron transport system, permease BAC0442 Protein 6e-77 62
hfeD YP_248074.1 ABC-type chelated iron transport system, permease BAC0352 Protein 2e-64 55
hfeD YP_248074.1 ABC-type chelated iron transport system, permease BAC0441 Protein 7e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hfeD YP_248074.1 ABC-type chelated iron transport system, permease VFG0528 Protein 2e-64 55