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Name : XC_0740 (XC_0740) Accession : YP_241838.1 Strain : Xanthomonas campestris 8004 Genome accession: NC_007086 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 888122 - 889621 bp Length : 1500 bp Strand : + Note : - DNA sequence : ATGTCGACCACCACTCCCACGGCCACGCTGTCGTACGCGTTTGCCAAGCGCCACGGCGTGGTGCTGCTCGGCGGCGATAA CGCCGCGCAGGCGCAGGTCGGCCTGCGCGCCGGTGGCGACGTGCAGGCCTTGATCGAAGTGCGCCGCGTGCTTGGCGTGC CGTTGCAGGTGCGCACGTTGGCACCGGCGGTGTTCGACCGGCACGTGTCGGAAATCTATGCCGATGCCGGGCTGGAGCAG GGCATGCCGGTGGAAGCGCTGGACCTGCACGGCAGCCTGGATTCGCTGATCGAAGATATCCCCACCGCCGATCTGCTCGA CAGCCAGGACGATGCGCCGATCATCCGCCTGATCAACGGCATCATCGCCGAGGCCGCACGCCTGGGTGCGTCCGACGTGC ATCTGGAATCGTACGAGTCGCGCCTGCGCGTGCGCTTGCGCGTGGACGGGGTGATGCGCGAAGCGGCGACCTTGCCGGGG CGGATCGCGCCGTTGCTGGTCTCGCGCGTCAAGGTGATGGCGCGCCTGGATATCGCAGAGAAACGCATCCCTCAAGATGG CCGGGTGTCATTGGCCATGGGCGCCAAGGCGCTGGATGTGCGCGTTTCCACTCTGCCCACCCGTGGCAGCGAACGCGTGG TGCTGCGTATCCTGGACAAGGAGCAGGGCACCTTGTCGCTGACCCAGTTGGGCATGCCCGCCGGTGTGATGGGCGCAGTG CAACGCGCGCTGCAGGTGCCCAACGGCATCGTGCTGGTGACCGGGCCCACCGGCTCGGGCAAGACCACCACGCTGTATGC CGGGCTGAGCCTGCTCAACGACGGTTCGCGCAACATCCTCACTATTGAAGACCCGGTGGAATACGCCATCGACGGCGTTG GCCAGACCCAGGTCAATGCGCGCGTGGGCATGACCTTTGCCGCCGGCCTGCGTGCAATCCTGCGCCAGGACCCGGACGTG GTGATGATCGGCGAGATCCGCGATACCGAAACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTC CACCGTGCACACCAACGATGCGGTGGGCGCGGTCACGCGCCTGCGCGACATGGGCATCGAACCATTCCTGCTGGCCTCCA GCCTGCGCCTGATCCTGGCGCAGCGGCTAGTGCGCCGGCTGTGCACGCACTGCCGCACGCCACGGCCGCTGGATGCGGCA ACCACGCAGATGCTGGGCACATCTACCGATGCGGTGATCTACAGCGCCGCCGGCTGTGCGGCCTGTCACCACAGTGGCTA TGCTGGGCGCTTGGGGATCTACGAAGCCATCACCGTCGACGACACCGTGCGCCGGCTGATCGGCGACAACGCCGACGAAG ACGCATTGGCCGCCGCGGCCTTCGTACGTGCGCCGCGCCTGGGCGACGCCGCGCGCGCGGCCGTGCTGCAAGGCGTGACC ACGCTGGAAGAAGCCTTGCGCGTCACCCGTCAGCAGGACGAGGCGCATGGCGAAGTTTGA Protein sequence : MSTTTPTATLSYAFAKRHGVVLLGGDNAAQAQVGLRAGGDVQALIEVRRVLGVPLQVRTLAPAVFDRHVSEIYADAGLEQ GMPVEALDLHGSLDSLIEDIPTADLLDSQDDAPIIRLINGIIAEAARLGASDVHLESYESRLRVRLRVDGVMREAATLPG RIAPLLVSRVKVMARLDIAEKRIPQDGRVSLAMGAKALDVRVSTLPTRGSERVVLRILDKEQGTLSLTQLGMPAGVMGAV QRALQVPNGIVLVTGPTGSGKTTTLYAGLSLLNDGSRNILTIEDPVEYAIDGVGQTQVNARVGMTFAAGLRAILRQDPDV VMIGEIRDTETAQIAVQASLTGHLVLSTVHTNDAVGAVTRLRDMGIEPFLLASSLRLILAQRLVRRLCTHCRTPRPLDAA TTQMLGTSTDAVIYSAAGCAACHHSGYAGRLGIYEAITVDDTVRRLIGDNADEDALAAAAFVRAPRLGDAARAAVLQGVT TLEEALRVTRQQDEAHGEV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-114 | 52 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-114 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XC_0740 | YP_241838.1 | type II secretion system protein E | VFG0182 | Protein | 2e-118 | 55 |
| XC_0740 | YP_241838.1 | type II secretion system protein E | VFG2048 | Protein | 2e-114 | 52 |
| XC_0740 | YP_241838.1 | type II secretion system protein E | VFG1876 | Protein | 5e-118 | 51 |
| XC_0740 | YP_241838.1 | type II secretion system protein E | VFG2426 | Protein | 2e-77 | 49 |
| XC_0740 | YP_241838.1 | type II secretion system protein E | VFG0112 | Protein | 3e-79 | 44 |
