Gene Information

Name : XC_4233 (XC_4233)
Accession : YP_245291.1
Strain : Xanthomonas campestris 8004
Genome accession: NC_007086
Putative virulence/resistance : Unknown
Product : ISxac3 transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 5009417 - 5010271 bp
Length : 855 bp
Strand : +
Note : -

DNA sequence : 
ATGCAAGCCCACTGCGAGGAATTCAGGGTGTGTGCAATGTGCCGGGTATTGCGGGTCAACCGGTCGGGTTATTACGCCTG
GTTGTGCTCGCCCAACAGTGAGCGCGCCAAGGAAGATGATCGCTTGCTTGGACTAATCAAGCACCACTGGCTGGCCAGCG
GCAGTGTCTATGGGCATCGCAAGATCACCACGGATCTGCGCGATCTGGGTGAGCGTTGTAGTCGTCATCGGGTGCATCGG
CTGATGCGCACCGAGGGACTGCGTGCCCAGGTGGGCTATGGTCGCAAACCGCGCTTCCATGGAGGAATGCAGTGCAAGGC
GGCGGCCAACCTGCTTGACCGACAGTTCGACGTGACGGAGCCGGACACGGCCTGGGCGAGCGATTTCACCTTCATCCGCA
CGCATGAAGGCTGGATGTATTTGGCTGTTGTGATCGATCTGTTTTCCAGGCAGGTCGTCGGCTGGGCGATGCGCGATCGG
GCCGACACCGAGTTGGTCGTGCAGGCGGTGTTGTCTGCGGTGTGGCGGCGCAAACCCAACACTGGTTGCTTGGTTCACTC
GGACCAAGGGTCTGTCTACACCAGCGATGACTGGCGCAGTTTCCTGGCGTCCCATGGCTTGGTGTGCAGCATGAGTCGGC
GTGGCAACTGCCACGACAACGCACCCGTGGAGAGCTTCTTCGGCCTGCTCAAACGCGAGCGGATCAGGCGGCGGACCTAT
CCCACCAAGGACGCCGCTCGCGCCGAGGTATTCGACTACATCGAGATGTTCTACAACCCCAACCGCCGCCACGGTTCAAC
TGGCGACCTGTCACCTGTAGAGTTTGAACGGCGCTACGCGCAACGAGGGTCTTGA

Protein sequence : 
MQAHCEEFRVCAMCRVLRVNRSGYYAWLCSPNSERAKEDDRLLGLIKHHWLASGSVYGHRKITTDLRDLGERCSRHRVHR
LMRTEGLRAQVGYGRKPRFHGGMQCKAAANLLDRQFDVTEPDTAWASDFTFIRTHEGWMYLAVVIDLFSRQVVGWAMRDR
ADTELVVQAVLSAVWRRKPNTGCLVHSDQGSVYTSDDWRSFLASHGLVCSMSRRGNCHDNAPVESFFGLLKRERIRRRTY
PTKDAARAEVFDYIEMFYNPNRRHGSTGDLSPVEFERRYAQRGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 9e-39 43
tnpB CAB61574.1 transposase B Not tested HPI Protein 4e-39 43
unnamed AAC31485.1 L0006 Not tested LEE Protein 4e-29 43
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 5e-29 43
Z5089 NP_290241.1 transposase Not tested LEE Protein 5e-29 42
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 4e-29 42
unnamed CAI43898.1 putative transposase Not tested LEE Protein 2e-29 42
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 2e-29 42
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-34 42
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-34 42
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-34 42
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-34 42
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-34 42
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-34 42
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-34 42
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-34 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-39 41
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-39 41
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 3e-31 41
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-41 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-41 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XC_4233 YP_245291.1 ISxac3 transposase VFG0785 Protein 2e-29 42
XC_4233 YP_245291.1 ISxac3 transposase VFG1122 Protein 7e-35 42