Gene Information

Name : XC_3016 (XC_3016)
Accession : YP_244084.1
Strain : Xanthomonas campestris 8004
Genome accession: NC_007086
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 3610239 - 3610883 bp
Length : 645 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGCAGATGCCTGATGTCGGCTCGCTGCTGCTGGTGGTCATCATGCTGGGGCTGCTGCCCTTCGCAGCGATGGTAGTCAC
CTCCTACACCAAGATCGTGGTCGTGCTCGGCTTGCTGCGCAATGCCATCGGCGTGCAGCAGGTGCCGCCGAACATGGTGC
TCAACGGCGTCGCGTTGCTGGTGTCGTGCTTTGTGATGGCGCCGGTGGGCATGGAGGCGTTCAAGGCCGCGCAGAATTAC
AGTCCCGGTGCCGACAACAGCCGTGTAGTGGTATTGCTCGATGCCTGTCGCGAACCGTTTCGGCAGTTCCTGCTCAAGCA
CACCCGCGAGCGCGAGAAAGCCTTTTTCATTCGCTCGGCGCAGCAGATCTGGCCCAAGGACAAGGCCGATACGCTCAAGC
CTGACGATCTTCTGGTGCTGGCACCGGCATTCACGCTGAGCGAGCTGACCGAGGCATTCCGCATCGGATTTCTGCTGTAT
CTGGTCTTCATCGTGATCGATCTGGTGGTGGCCAATGCGTTGATGGCGATGGGCCTTTCGCAGGTGACGCCAACCAACGT
GGCCATTCCGTTCAAACTGCTGTTGTTCGTGGCGCTGGATGGCTGGTCCATGCTGATCCATGGCCTGGTCCTGAGTTATC
GGTGA

Protein sequence : 
MQMPDVGSLLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQNY
SPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLVLAPAFTLSELTEAFRIGFLLY
LVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVALDGWSMLIHGLVLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-89 100
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-89 100
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 9e-88 97
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 9e-88 97
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-88 97
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-86 97
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-86 96
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-85 95
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-45 51
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-38 47
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-33 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-33 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-33 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-30 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 5e-30 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-29 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-29 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-30 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 6e-30 44
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-32 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-34 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-34 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-35 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-35 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-35 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-35 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-35 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-34 42
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-34 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-34 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-34 42
escR AAC31528.1 L0049 Virulence LEE Protein 1e-34 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-34 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-34 42
escR AAK26700.1 EscR Virulence LEE Protein 1e-34 42
escR AAL57527.1 EscR Virulence LEE Protein 1e-34 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-34 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-34 42
escR AAC38369.1 EscR Virulence LEE Protein 9e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein VFG0188 Protein 2e-48 53
XC_3016 YP_244084.1 type III secretion system protein VFG0394 Protein 8e-45 52
XC_3016 YP_244084.1 type III secretion system protein VFG0044 Protein 7e-45 48
XC_3016 YP_244084.1 type III secretion system protein VFG0519 Protein 5e-36 42
XC_3016 YP_244084.1 type III secretion system protein VFG0827 Protein 5e-35 42
XC_3016 YP_244084.1 type III secretion system protein VFG0715 Protein 4e-34 41
XC_3016 YP_244084.1 type III secretion system protein VFG2338 Protein 2e-32 41
XC_3016 YP_244084.1 type III secretion system protein VFG2494 Protein 3e-33 41