|
Name : XC_2064 (XC_2064) Accession : YP_243144.1 Strain : Xanthomonas campestris 8004 Genome accession: NC_007086 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2477040 - 2479052 bp Length : 2013 bp Strand : - Note : decatenates replicating daughter chromosomes DNA sequence : ATGCGGCTGTTCTTGTGCGAGAAGCCTTCCCAGGGCAAAGACATTGGCCGGATTCTCGGCGCCACGCAACGCGGTGAAGG CTGCCTCAACGGTTCCGGCGTCACCGTCACCTGGTGCATCGGCCATCTCGTAGAGGCGGCGGCACCCGAAGCCTACGACG AACAGCTAAAGCGCTGGTCCATCGAGCAGTTGCCCATCATTCCCCAGCGTTGGCAGGTCGAGGTCAAACCGAAAACCGCC ACGCAATTCAAGGTCGTCAAGGCGCTACTGGCGAAGGCAACACAGCTTGTCATCGCCACCGATGCCGACCGCGAAGGCGA ACTGATCGCCCGCGAGATCATTGACCTGTGCGGCTACCGCGGCCCCATCGAGCGGCTGTGGTTGTCGGCACTCAACGATG CGTCCATTCGCGCCGCGCTAGGCAAGCTCCGGCCATCGGCCGAGACGCTGCCGATGTACTACTCGGCACTAGCGCGCTCG CGTGCGGACTGGCTTGTGGGCATGAACCTCAGTCGGTTGTTCACGGTGCTGGGTCGGCAAGCCGGCTACGACGGAGTGCT GTCGGTCGGTCGCGTCCAGACCCCGACGCTCAAGCTGGTCGTGGACCGCGACCGCGAGATCGCGGCCTTCGTGTCCGTGC CGTACTGGGCCATCGACGTGTACCTGACCACAAGCGGCCAAGCCTTCACCGCGCAGTGGGTTTCGCCCGACACCTGCACC GACGACTCGGGCCGCTGCCTGCAGCAGCCGGTGGCACAGCAGGCGGCGCAGCAGATCCGCGCCACCGGCAGTGCCCAGGT TGTCTCGGTCGAAACCGAGCGCGTGCGTGAAGGCCCGCCGCTGCCGTTCGACCTGGGCACCTTGCAGGAGTTGTGTTCCA AGCAGCTTGGGCTGGATGTGCAGGAAACCTTGGACATCGCTCAGGCCCTGTACGAAACGCACAAGGCCACGACCTATCCG CGTTCGGATTCCGGCTACCTGCCGGAGAGCATGTTTGCCGAAGTCCCCATAGTCCTCGACAGCCTGCCCAAGACCGATTT CTCGCTGCGCCCGATCATTGACCAACTCGACCGCACACAACGCTCACGCGCTTGGAACGACGCGAAGGTGTCCGCGCACC ACGGCATCATCCCGACGCTCGAACCGGCGAACCTCTCGGCCATGAGCGAGAAGGAACTGGCGGTGTACAAGCTCATCCGG GCGCACTACCTCGCGCAGTTCCTTCCTCACCACGAGTTCGATCGCACAGTGGCGAACCTCTCTTGCGGCCAGCAGACGCT GACGGCCACAGGAAAGCAGGTGGTCGTCAAGGGCTGGCGCCTGGTGTTGGCCGAACCGCAACCCGAGGAGGATAGCGACA CCGCGGCGCGCAGCCAGGTGCTGCCCGCGCTACGCGAGGGCGTGTCATGCCAGGTAGCAGATGTCGATCTGAAGGCGCTC AAGACACAGCCATCTCGACCCTACACGCAGGGCGAATTGGTCAAGTCCATGAAAGGCGTCGCCAAGCTGGTCTCGGATCC GCGCTTGAAACAGAAACTCAAGGATACGGTCGGCATCGGCACCGAAGCGACACGGGCTAACATCATCAGCGGCCTGATCG CACGCGGCTATCTCATGAAGAAGGGGCGCGCGATTCGCGCCTCGGATGCGGCATTCACCCTCATCGACGCCGTGCCCGCA GCGATTGCCGACCCCGGGACCACCGCCGTATGGGAACAAGCGCTAGACATGATCGAAGCGGGACAACTCACGCTGGACGT GTTCATCGGCAAGCAGGCCGCATGGATTTCGCAGTTGATCACGCAGTACGCCAGCGCGTCCCTGTCAATCAAGGTTCCCC ATGGGCCGGCTTGCCCGCAGTGCGGCGCACCCACGCGCCAGCGCAGTGGCAAGAGCGGCCCGTTCTGGTCGTGCAGTCGC TATCCAGACTGCAAAGGCACGCTGCCGGTCGAGTCCGGCACGTCCAAGCGCGTAGCCTCACGCTCGCGCCGTGGCGGCCG AAAAGACTCCTGA Protein sequence : MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRWSIEQLPIIPQRWQVEVKPKTA TQFKVVKALLAKATQLVIATDADREGELIAREIIDLCGYRGPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARS RADWLVGMNLSRLFTVLGRQAGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVYLTTSGQAFTAQWVSPDTCT DDSGRCLQQPVAQQAAQQIRATGSAQVVSVETERVREGPPLPFDLGTLQELCSKQLGLDVQETLDIAQALYETHKATTYP RSDSGYLPESMFAEVPIVLDSLPKTDFSLRPIIDQLDRTQRSRAWNDAKVSAHHGIIPTLEPANLSAMSEKELAVYKLIR AHYLAQFLPHHEFDRTVANLSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQVLPALREGVSCQVADVDLKAL KTQPSRPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIISGLIARGYLMKKGRAIRASDAAFTLIDAVPA AIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQLITQYASASLSIKVPHGPACPQCGAPTRQRSGKSGPFWSCSR YPDCKGTLPVESGTSKRVASRSRRGGRKDS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 89 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 76 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 8e-167 | 50 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 8e-167 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 6e-167 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 4e-168 | 50 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 1e-167 | 48 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 3e-123 | 42 |
