Gene Information

Name : XC_2024 (XC_2024)
Accession : YP_243105.1
Strain : Xanthomonas campestris 8004
Genome accession: NC_007086
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2439093 - 2440613 bp
Length : 1521 bp
Strand : -
Note : -

DNA sequence :
ATGACGCTTTTCACCACCGACTACCTGGAGTACTACCTCACCCTTGTCTCCTGGATCGTCAATAACGGCATCTGGGCCGT
GTTGGTATCCAGCGGGGTATTTGCGCTGCCCTTTGTGGCGATCATCGTGCAGGAATGGCTCAAGGCCCGCACGGAAGGTG
CCGACGAAGGCAACAAGGGCGTGCTCTCGGCTGCGCGCATCGAGAACCGAGTGTTCGTCGCCATCGTGGTAGTGATGTTT
GCTGGCATCCCTTTCATCGACGTCGACCTCAACACCATCCAGTACGACAGCTCACGCTCCGCGCAGTGCCAGGTCAGCGT
GCCGCAGCCGGCCGACACAGGTTGGTCGCAGTCCTTCTCGACCCTCAACAATCAAAGCGCAAAGTTGCCGGTGTGGTGGG
CCTTCATCCACGCGCTCTCGCGCGCTGTCACGGGCGCTTCTGTCGCGGCAATCCCCTGCGGCACCGACCTGCGGCAGATG
CGGATGGAGATTGACGCCACGCGCATCGACGATCCAATGCTGGCCCAGGAAGTGGCGGATTTCAGCCACGATTGCTACGG
GCCGGCCCGTGCCAAGCTGTTCATGCAGCGCCCGCAACTTGATGAAGACCAGATGCACGATGTCACCTGGATCGGCTCGC
GCTTCTTGACGGACACGGCCGGCTACTACGACAGCTATCGCTCCAGCACGCCGCGCGAGGACTGGCCCTACGACAGCAAC
CGAGATGCAGGGCTTGCGCAGGTGTCCAGCGGCGGCGGATACCCGAACTGTCGGCAATGGTGGGCCGATGGCAGCAACGG
CCTGCGGGCACGGCTGCTGGGCCAGGTGGACCCAAACCTGCTCACGCGGCTGGCGGGCTGGGCTGGGTTCCTGAGCCGCG
CCGACGTGGATGATTCGGTGATTCGCGCGATCGCCTCGCCGCGACAACAGAAGCTCAATCAGGGCTCGGTCTATACGGAC
TACGGGGGCCAGATCGACAAGACTTTGCCGAACATCGTGACGCGCGCGGCAGGCGACGTGGGAATGGCCGTTGGGGGACT
CGCAGCATTCCCCGCCATGGACGTGGTGCGCCAGGCCCTGCCCATGGTGCTCGCGCTGCTCAAGATGGCGTTGGTGATCT
GCATTCCTCTGGTATTGGTCGTGGGCACCTACGACCTCAAGATGGTCGTCACGGTCAGCGTCGTGCAGTTCGCGCTGTTC
TTCGTCGATTTTTGGTTCCAGTTGGCCCGCTGGATCGACAGCACCATCCTCGATGCGCTCTATGGATGGGGCTGGGGATG
GAACCGGCCGCACAATAACTTCGATCCGATGGTCGGATTGAACAATGCCTTCGGCGACATGCTTCTGAACTTCGTCACCG
GGACGATGTTCCTGGTCCTGCCGGGATTCTGGCTGGCGAGCCTCACCTGGGTTGGGATTCGGGCCGGACATGCCATCCAA
GGACTCTCAGATGGCAGCAAAAGCGCAGGTCAAGCGGGTAGCAAGGGTGCTGGAGCACTCACCGGGGGCAAGCTGAAATA
G

Protein sequence :
MTLFTTDYLEYYLTLVSWIVNNGIWAVLVSSGVFALPFVAIIVQEWLKARTEGADEGNKGVLSAARIENRVFVAIVVVMF
AGIPFIDVDLNTIQYDSSRSAQCQVSVPQPADTGWSQSFSTLNNQSAKLPVWWAFIHALSRAVTGASVAAIPCGTDLRQM
RMEIDATRIDDPMLAQEVADFSHDCYGPARAKLFMQRPQLDEDQMHDVTWIGSRFLTDTAGYYDSYRSSTPREDWPYDSN
RDAGLAQVSSGGGYPNCRQWWADGSNGLRARLLGQVDPNLLTRLAGWAGFLSRADVDDSVIRAIASPRQQKLNQGSVYTD
YGGQIDKTLPNIVTRAAGDVGMAVGGLAAFPAMDVVRQALPMVLALLKMALVICIPLVLVVGTYDLKMVVTVSVVQFALF
FVDFWFQLARWIDSTILDALYGWGWGWNRPHNNFDPMVGLNNAFGDMLLNFVTGTMFLVLPGFWLASLTWVGIRAGHAIQ
GLSDGSKSAGQAGSKGAGALTGGKLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C40 AAN62133.1 hypothetical protein Not tested PAGI-2(C) Protein 0.0 89
ORF SG48 AAN62270.1 hypothetical protein Not tested PAGI-3(SG) Protein 0.0 79
pph92 CAI36133.1 hypothetical protein Not tested PPHGI-1 Protein 2e-154 62
RL014 AAP84141.1 conserved hypothetical protein Not tested PAPI-1 Protein 2e-146 59
unnamed ABR13354.1 hypothetical protein Not tested PAGI-5 Protein 8e-146 59
EXA17 ABD94626.1 conserved hypothetical protein Not tested ExoU island A Protein 2e-146 58
PMI2570 YP_002152289.1 hypothetical protein Not tested Not named Protein 7e-91 44
STY4579 NP_458664.1 putative membrane protein Not tested SPI-7 Protein 2e-96 44
t4276 NP_807874.1 hypothetical protein Not tested SPI-7 Protein 2e-96 44
Pmu_03040 YP_005176203.1 TraG-like domain-containing protein Not tested ICEPmu1 Protein 4e-99 41