Gene Information

Name : XC_1989 (XC_1989)
Accession : YP_243072.1
Strain : Xanthomonas campestris 8004
Genome accession: NC_007086
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2399623 - 2400306 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
GTGATTCGCGCCGAACGGCTGGGTAAGACCTACGCCGAAGGCAAGATGCGTACGCCGGTGTTCGATGGTCTGGATCTGTC
GGTGGCGACCGGCGAAACCGTGGCGATCGTCGGCGCATCCGGTGCAGGCAAGAGCACCTTGCTGCACTTGCTCGGTGGGC
TGGATATCCCGACCTCCGGCGAGGTGTATGTCGCGGGTCGGCGCATGTCTGCATTGTCCGATGGCGAGCGCGGCAAGCTG
CGTAACCGCTCGCTCGGTTTCGTGTATCAGTTCCATCATCTGTTGCCGGAATTCACTGCGCTGGAAAACGTCATGATGCC
GGTGCTGTTGTCCGGGCAGGATGTGTCAATCGCGCGCGGGCAGGCACTGCAGTTGCTGGAATCAGTTGGCCTGGGACACC
GGGTGGAGCACAAGCCCAGCGAGCTGTCGGGTGGCGAGCGTCAGCGCTGTGCGGTGGCGCGGGCGTTGGTGAACAAGCCC
GGCTGCGTGCTCGGCGATGAGCCCACCGGCAATCTCGACGACAAGACGGCTGGCACCGTGTTCGAGCTGATGCTGGAACT
CAACCGCGCCCAGCGTACGAGCCTGGTGCTGGTGACGCACGATCGCAGCCTGGCGCGACGTCTCGACCGCGTCCTTGAAT
TGCACCAAGGCAAGTTGCGCGAACTGGCGCCTTCGGCGGTGTAA

Protein sequence : 
MIRAERLGKTYAEGKMRTPVFDGLDLSVATGETVAIVGASGAGKSTLLHLLGGLDIPTSGEVYVAGRRMSALSDGERGKL
RNRSLGFVYQFHHLLPEFTALENVMMPVLLSGQDVSIARGQALQLLESVGLGHRVEHKPSELSGGERQRCAVARALVNKP
GCVLGDEPTGNLDDKTAGTVFELMLELNRAQRTSLVLVTHDRSLARRLDRVLELHQGKLRELAPSAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-28 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XC_1989 YP_243072.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 9e-38 43
XC_1989 YP_243072.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 5e-31 42