Gene Information

Name : XC_1293 (XC_1293)
Accession : YP_242382.1
Strain : Xanthomonas campestris 8004
Genome accession: NC_007086
Putative virulence/resistance : Virulence
Product : amino acid transporter
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0531
EC number : -
Position : 1581739 - 1583118 bp
Length : 1380 bp
Strand : -
Note : -

DNA sequence : 
ATGACCGACACCCCAGGCCGCAGCGACGCGGCCACGCTGGAACGCTTCGGCTACGCCCAGGAACTCAAGCGGCAGCTCAG
CCTGAAGGACCTGCTGATCTATGGCCTGGTGTTCATGGTGCCGACCGCGCCGTTCTCGATTTTCGGCGGGGTATTCGACA
TCAGCGCGGGAATGGTGCCGCTGACCTATCTGGTGGGCTTCGTGGCAATGCTGTTCACCGCACTAAGCTACCAGCAGATG
TCGCAGGCGTTTCCGGTGGCCGGTTCGGTGTATGCGTATGTGGGGCGGGGCTTGAGCGGCGGCATGGGATTTCTGGCCGG
CTGGGCCATCCTGCTGGACTATTTACTGGTACCCACCCTGCTCTACGTGGTCGGCGCCAACGCCATGCACAACGTGCTGC
CACAGGTGCCGCAGCCAGCGTGGATCGCCTTCTTCGTGGTGCTCAACACGGTGGTCAATCTGCGCGGCATCGAGACCACT
GCGCGTGCCAATCGCTTCTTCCTGTATGCGCAGCTCATCGTGCTGGCGCTGTTCGTGGTGCTGGCCACACTGGCCATCCA
GCGCGGCGTCAACGGCGCACAGTGGACCCTGCGCCCGTTCTACAACCCGCAGGCGTTTTCGCCGCAGTTGATTTTCAGTG
CACTGTCGGTGGCGGTGGTGTCGTTCCTGGGCTTCGATGCGATCTCCACGCTGTCGGAGGAAACCCGCGGCGGCAACCGG
GTGGTCGGACGCGCGACGCTGTTGGCGTTGGTGCTGGTGGCCGGCCTGTTCGTGCTGCAGACCTGGCTGGCAGCGTTGCT
GCAGCCGCACTTGCAGCGCTACCCCAGCGCGCAAGCGTCCAACGATGCGTTCTTCGAGATCGGGCGGCTGATTGCCGGGC
CGTGGATGCAGATTGTGATTGCGCTGACGGTGGCCATCAGTGCGGCGATTGCCAATTCGTTGGTGGCACAGGCGGCCACC
TCGCGGCTACTGTTCGCAATGGCACGCGACCGCCAATTGCCCGCGTTCCTCCGCTATATCCATCCGCGCACTGGCGTGCC
GCAGCGGGCGATCCTGCTGGTGGCGGCCCTGAGCATGGTGCTGGGGGAAGTGTTCGTCGGGCAGATCGCGTTGCTGTCCT
CGCTATGCAATGTGGGTGCGCTTACCGCCTTCGTGCTGCTGCATGTGGCGGTGCTTTGGCACTTTCGCGCGCATGGCCGC
AAGGTGCTGCACGGAGTGGTGCCAGTGATCGGCATCGTGATCCTGGCCTATGTGCTGATCAATGCCGACCTGCATGCGCA
GCTGGGCGGCAGCGCCTGGATGGTGGTCGGCCTGGCCGTGCTGGCCTTCCTCAAGTTCAGCGGGCGCTCGACCGAATTCC
GCGCTACTGACGCGTTGTAA

Protein sequence : 
MTDTPGRSDAATLERFGYAQELKRQLSLKDLLIYGLVFMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQM
SQAFPVAGSVYAYVGRGLSGGMGFLAGWAILLDYLLVPTLLYVVGANAMHNVLPQVPQPAWIAFFVVLNTVVNLRGIETT
ARANRFFLYAQLIVLALFVVLATLAIQRGVNGAQWTLRPFYNPQAFSPQLIFSALSVAVVSFLGFDAISTLSEETRGGNR
VVGRATLLALVLVAGLFVLQTWLAALLQPHLQRYPSAQASNDAFFEIGRLIAGPWMQIVIALTVAISAAIANSLVAQAAT
SRLLFAMARDRQLPAFLRYIHPRTGVPQRAILLVAALSMVLGEVFVGQIALLSSLCNVGALTAFVLLHVAVLWHFRAHGR
KVLHGVVPVIGIVILAYVLINADLHAQLGGSAWMVVGLAVLAFLKFSGRSTEFRATDAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ycjj YP_216387.1 amino acid permease Not tested SPI-2 Protein 1e-63 44
orf48 NP_460344.1 amino acid permease Not tested SPI-2 Protein 1e-63 44
STY1743 NP_456146.1 putative amino acid permease Not tested SPI-2 Protein 2e-64 44
t1247 NP_805052.1 amino acid permease Not tested SPI-2 Protein 2e-64 44
ORF48 CAA68204.1 amino acid permease YeeF like protein Not tested SPI-2 Protein 2e-60 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XC_1293 YP_242382.1 amino acid transporter VFG0480 Protein 6e-64 44