Gene Information

Name : XC_1061 (XC_1061)
Accession : YP_242151.1
Strain : Xanthomonas campestris 8004
Genome accession: NC_007086
Putative virulence/resistance : Virulence
Product : two-component system regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1277218 - 1278621 bp
Length : 1404 bp
Strand : -
Note : -

DNA sequence : 
GTGCGCAACATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCT
GGGCCGCATGGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACC
TGTGCCTGACCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACG
CCGGTGGCCATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAG
CAAGCCGGTGGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGC
CACCGCCTCCGCTGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAG
GTCGCGCGCAGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGA
GCAGGGCGCGCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCCGCCGAGCTGATGGAGAGCGAGTTCT
TCGGCCATAAGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTG
TTTCTGGACGAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCC
GGTCGGCGCCTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCG
ACGGCCGCTTTCGTCACGATCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGC
GACCTGCCGCAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATCCCGCTGCTGACCCAGTC
AGCCCTGGATGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCC
TGGCCGAAGACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGC
AGCGCCGCCATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACT
GGAACGCGCCGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGT
TTCGTGCGTTGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Protein sequence : 
MRNMNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQT
PVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPLEQASRLLGDSTAMESLRSTIGK
VARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTL
FLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSG
DLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPG
SAAIEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-101 49
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-101 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XC_1061 YP_242151.1 two-component system regulatory protein BAC0467 Protein 5e-65 43
XC_1061 YP_242151.1 two-component system regulatory protein BAC0089 Protein 1e-70 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XC_1061 YP_242151.1 two-component system regulatory protein VFG1214 Protein 8e-126 63
XC_1061 YP_242151.1 two-component system regulatory protein VFG0116 Protein 9e-55 41