Gene Information

Name : Psyr_0722 (Psyr_0722)
Accession : YP_233828.1
Strain : Pseudomonas syringae B728a
Genome accession: NC_007005
Putative virulence/resistance : Virulence
Product : helix-turn-helix, Fis-type
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 826013 - 827350 bp
Length : 1338 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGTAGTGCGCGTAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCGGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATCCACGCGCTGAAGGCCGGAGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTGGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCGCAACCCACGCGCAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAGTCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCAGGCAGTGGCAAGGAGCTCGTAGCGCGTCTGATCCACGAGCAGGGCCCGCGCATCGACAAACCTTT
CATACCGGTGAATTGCGGCGCCATTCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTTAGCG
GTGCCCACGAAGACAAGCCAGGTCTGTTTCAGGCGGCGCATACCGGGACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAACAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCTGCCAGCCCTCAGGAGAACGACGGCCCGAGCCTGGCCGATATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCTGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Protein sequence : 
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSLPGAQPTRSIDNRLLGDSLAMRTLRSQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQENDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-94 48
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-94 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_0722 YP_233828.1 helix-turn-helix, Fis-type BAC0467 Protein 2e-71 44
Psyr_0722 YP_233828.1 helix-turn-helix, Fis-type BAC0089 Protein 6e-76 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_0722 YP_233828.1 helix-turn-helix, Fis-type VFG1214 Protein 2e-165 78
Psyr_0722 YP_233828.1 helix-turn-helix, Fis-type VFG1249 Protein 8e-64 41