Gene Information

Name : Psyr_4800 (Psyr_4800)
Accession : YP_237865.1
Strain : Pseudomonas syringae B728a
Genome accession: NC_007005
Putative virulence/resistance : Virulence
Product : heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5689760 - 5690434 bp
Length : 675 bp
Strand : -
Note : -

DNA sequence : 
ATGCGAATCCTTGTAGTAGAGGACGAGCCGAAAACTGCCGAGTACATGCATCAGGGTCTGACCGAAAGCGGCTATGTGGT
CGATATCGCCAACACCGGACTCGATGGGCTATATCTCGCGCAGCATCAGGCCTATGACGTCGTGATTCTGGACGTGAACC
TGCCGGAGATGGATGGCTGGGAGGTGTTGAGCCGCCTGAGAAAAACCGTCAACACGCGCATCATGATGGTCACCGCACGG
GGACGGCTGGAGGAGAAGGTCAAGGGGCTGGAAATGGGCGCCGATGATTATCTGGTCAAGCCGTTCGAGTTTCCCGAGCT
GCTGGCCCGGGTCCGCACCCTCATGCGCCGCAGCGAACAGACCACGACCGCCAAGGTGTTGCAGGTCGGCGACCTGGAGC
TCGATCAAGGCCGGCACCGGGCGTTTCGCGGCAAGCAGCGCATCGACCTGACGACCAAGGAGTTCGCGCTGCTGCACCTG
TTGATGCGGCACAGCGGCGAGGTCATGTCGCGCACCCAGATCATTTCGCTGGTCTGGGACATGAATTTCGATTGCGATAC
CAACGTGGTGGAGGTGTCGATCCGCCGTCTGCGCGCGAAGATCGATGATCCGTTCGAGACCAAGCTGATTCACACGCTGC
GTGGTGTCGGTTACGTACTGGAAGTGCGTGAATGA

Protein sequence : 
MRILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNLPEMDGWEVLSRLRKTVNTRIMMVTAR
GRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHL
LMRHSGEVMSRTQIISLVWDMNFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEVRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-55 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-54 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_4800 YP_237865.1 heavy metal response regulator BAC0083 Protein 5e-62 59
Psyr_4800 YP_237865.1 heavy metal response regulator BAC0125 Protein 3e-65 59
Psyr_4800 YP_237865.1 heavy metal response regulator BAC0197 Protein 2e-64 58
Psyr_4800 YP_237865.1 heavy metal response regulator BAC0638 Protein 3e-55 56
Psyr_4800 YP_237865.1 heavy metal response regulator BAC0308 Protein 3e-59 55
Psyr_4800 YP_237865.1 heavy metal response regulator BAC0111 Protein 1e-62 54
Psyr_4800 YP_237865.1 heavy metal response regulator BAC0347 Protein 7e-57 51
Psyr_4800 YP_237865.1 heavy metal response regulator NC_007793.3914065.p0 Protein 4e-37 42
Psyr_4800 YP_237865.1 heavy metal response regulator NC_002758.1121390.p0 Protein 4e-37 42
Psyr_4800 YP_237865.1 heavy metal response regulator NC_010079.5776364.p0 Protein 4e-37 42
Psyr_4800 YP_237865.1 heavy metal response regulator NC_002952.2859858.p0 Protein 4e-37 42
Psyr_4800 YP_237865.1 heavy metal response regulator NC_007622.3794948.p0 Protein 4e-37 42
Psyr_4800 YP_237865.1 heavy metal response regulator NC_003923.1003417.p0 Protein 4e-37 42
Psyr_4800 YP_237865.1 heavy metal response regulator NC_013450.8614146.p0 Protein 4e-37 42
Psyr_4800 YP_237865.1 heavy metal response regulator NC_002951.3238224.p0 Protein 4e-37 42
Psyr_4800 YP_237865.1 heavy metal response regulator AE015929.1.gene1106. Protein 4e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_4800 YP_237865.1 heavy metal response regulator VFG0596 Protein 9e-56 52
Psyr_4800 YP_237865.1 heavy metal response regulator VFG1390 Protein 2e-39 43
Psyr_4800 YP_237865.1 heavy metal response regulator VFG1389 Protein 7e-35 43
Psyr_4800 YP_237865.1 heavy metal response regulator VFG1386 Protein 3e-36 41