|
Name : ureC (Psyr_4436) Accession : YP_237504.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : 3.5.1.5 Position : 5302524 - 5304224 bp Length : 1701 bp Strand : + Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : ATGAAGATAAGCCGCCAAGCCTACGCAGACATGTTCGGCCCCACCGTCGGCGACAAGGTTCGCCTGGCCGACACCGAGCT GTGGATCGAGGTCGAGAAGGACTTCACCACCTATGGCGAAGAAGTGAAGTTCGGCGGTGGCAAGGTCATTCGTGACGGCA TGGGCCAGGGCCAGCTGCTGGCCGCCGAGGTGGTCGACACGCTGATCACCAATGCCTTGATCATCGATCACTGGGGCATC GTCAAGGCCGACGTCGGCATCAAGAACGGGCGTATCGCGGCCATTGGCAAGGCGGGCAACCCGGACATCCAGCCGGACGT GACCATTGCCGTCGGCGCTGCCACCGAGGTCATTGCCGGCGAAGGCATGATCCTCACCGCGGGTGGCGTCGACACGCACA TCCACTTCATCTGCCCGCAGCAGATCGAAGAGGCCCTGATGAGCGGCGTGACAACGATGATCGGCGGCGGCACCGGCCCG GCCACGGGCACCAATGCCACCACCGTAACACCCGGCCCGTGGCACATGGCGCGCATGCTCCAGGCCTCGGACTCGTTCCC GATGAACATCGGCTTCACCGGCAAGGGCAACGTCAGCCTGCCCGGCCCGCTGATCGAACAGGTCAAGGCCGGCGCCATCG GTCTGAAGTTGCACGAGGACTGGGGCACCACGCCTGCGGCCATCGACAACTGCCTGAGCGTGGCCGACGAATACGACGTG CAGGTCGCGATCCACACCGACACCCTCAACGAGTCGGGTTTTGTCGAGACCACCCTGGCCGCGTTCAAGAACCGCACGAT TCACACTTATCACACCGAAGGTGCCGGTGGCGGTCATGCGCCGGACATCATCAAGGCCTGTGGCTCGCCGAACGTGCTGC CGAGCTCGACCAACCCGACGCGTCCGTTCACCCGCAACACCATCGACGAGCACCTGGACATGCTCATGGTCTGCCATCAC CTGGACCCGAGCATCGCCGAAGACGTGGCTTTCGCGGAAAGCCGCATCCGTCGCGAGACCATCGCTGCCGAGGATATCCT TCACGACCTGGGCGCCTTTTCCATGCTCAGTTCCGACAGCCAGGCCATGGGCCGGGTTGGCGAAGTGATCATGCGCACCT GGCAAACCGCCGACAAGATGAAGAAACAGCGCGGCCCACTGCCGCAGGACGGCCCGGGCAACGACAACTTCCGCGCCAAG CGTTACATCGCCAAATACACCATCAATCCGGCGATCACCCACGGCATCAGCCATGAAGTGGGCTCCATCGAAGTCGGTAA ATGGGCAGACCTGGTGCTGTGGCGGCCGGCGTTCTTTGGCGTCAAACCGACCCTGATCCTCAAGGGCGGGGCCATCGCTG CCAGCCTGATGGGCGACGCCAATGCTTCAATCCCGACCCCGCAACCGGTTCATTACCGCCCGATGTTCGCAAGCTTCGGC AGTTCACTGCACGCCACCAGCCTGACGTTCATCAGCCAGGCAGCGTTCGACGCCGGCGTACCGGAGTCACTGGGCCTGAA AAAGCAGATCGGTGTCGTCAAAGGCTGCCGTACCGTGCAGAAAAAAGACCTGATCCACAACGATTACCTGCCGGACATCG AAGTCGACCCGCAGACCTATCAGGTCAAGGCCGACGGCGTGCTGCTATGGTGCGAACCTGCCGATGTGCTGCCGATGGCG CAGCGGTATTTTCTGTTTTGA Protein sequence : MKISRQAYADMFGPTVGDKVRLADTELWIEVEKDFTTYGEEVKFGGGKVIRDGMGQGQLLAAEVVDTLITNALIIDHWGI VKADVGIKNGRIAAIGKAGNPDIQPDVTIAVGAATEVIAGEGMILTAGGVDTHIHFICPQQIEEALMSGVTTMIGGGTGP ATGTNATTVTPGPWHMARMLQASDSFPMNIGFTGKGNVSLPGPLIEQVKAGAIGLKLHEDWGTTPAAIDNCLSVADEYDV QVAIHTDTLNESGFVETTLAAFKNRTIHTYHTEGAGGGHAPDIIKACGSPNVLPSSTNPTRPFTRNTIDEHLDMLMVCHH LDPSIAEDVAFAESRIRRETIAAEDILHDLGAFSMLSSDSQAMGRVGEVIMRTWQTADKMKKQRGPLPQDGPGNDNFRAK RYIAKYTINPAITHGISHEVGSIEVGKWADLVLWRPAFFGVKPTLILKGGAIAASLMGDANASIPTPQPVHYRPMFASFG SSLHATSLTFISQAAFDAGVPESLGLKKQIGVVKGCRTVQKKDLIHNDYLPDIEVDPQTYQVKADGVLLWCEPADVLPMA QRYFLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 0.0 | 76 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 0.0 | 76 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 1e-162 | 63 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-162 | 63 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 2e-162 | 63 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-162 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | YP_237504.1 | urease subunit alpha | VFG0270 | Protein | 3e-158 | 65 |
