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Name : Psyr_4038 (Psyr_4038) Accession : YP_237106.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Virulence Product : YD repeat-containing protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3209 EC number : - Position : 4822412 - 4825057 bp Length : 2646 bp Strand : + Note : - DNA sequence : ATGAACACTACCTTGCACCAACACACACCTGATGTAAGAGCCGTTGACCCAAGAGGACTGGCAATCGGCAATATCGCTTA TTGGCGAAGCGAGGCGCAGCAAGCGATGGAGCGCCGTATTACACGGAAGACTTACAACGCTGCGGGCCATGTGAGCACGC AAAGAGATCCACGACTTGATGCGCCAAACCTGACAACAACTTACAGCCTTTCGGGGCAGCCGATACTGATCGACAGTGTG GACGCCCACTGGCGACTGCTGCTATTGGGAGAAGCAGGTCAGACCATCAGCGGCTGGGACAGTAACGCCAATCAGCGTCA TTTTGAGTACGATCCGTTGATGCGCCCTGTTTCGGTTACCGAGCAGCATCAGGTCGTTGAGCGTTTTGCCTATGGCGGAC CTGATTCAGCCAGCCATAACTTATGCGGTCGGCTATCGCGCCATGACGACACCGCCGGTACAAGCCTGTCCCCGGACCAT GGCCTGAGCGGCAAAGTACTTAATCAACATAGATATTTCTTACGAGTATCAGTAACGCCGGACTGGCCGCTGGCCGAAGC CGAGCGCGATGCCTTGCTTGAGCCTGTCGTGCTGCAAACCTGCTGGCGGTTCAATGCGCTGGGCGACGCGCTTGCGCAGA CCGATGCCATGGGCAATACCCAGGCATTTGGCATGACTGTCGCCGGACAGTTGAAAGCGGCTGGACTGACATTGGCCGGT GCCTCACAGCCGCAGACACTGGTCAGTGCAATTGACTATGACGCATTCAACCAGGTCGAGCAGGAGACGGCAGGAAATGG CGTGGTCAGTCGCTATGTGTATGATCTACAGGACGGTCGGCTGATTGAACTCAGTGCGCTATCTGCTGACGGCTCAGTGC TGCAAAAACTGAATTACAGCTATGACCCGGCAGGTAACGTTCTACTCATCAACGATGCCTCGCAGCCAGACCGGTATTGC GACAACCAGCTTATCGAACCGATCAGCCGTTACCGTTACGACACGTTGTACCAGTTGATCGAAGCCACGGGCCGGGAGGT CAGAAACGGGGCCAGCCATGGTCCGGCGCTGCCCGGTCTGCAACCTGTCCCGACGCTCGATCCTTGCCAGGTCAGCAACT ACAAACAGCATTACAGCTACGACGCTGCGGGTAACCTGCTGCAAATGCGCCACGAAGGCGCGCGCAACTTTACCCGCAAC ATGCACGTTGCACCGGACAGCAATCGCAGCCTGCCCGACGATGACGGCGATGTGGATTTCGCCACGAGTTTTGATGCCAA CGGCAATCTGCTGCAACTGGTGCGTGGGCAGGTTATGGGCTGGGATGTGCGTAACCAGTTGCAGCACATCACCACTGTGC AACGTGAAGACGGGTCGAGCGATGACGAACGCTATGTCTATGACGGCCAAGGTCAGCGTTGTCGCAAGATCAGTACTGCT CAGGCATCAGGTCGCATGCTGATCAACGAAGTGCGCTACCTGCCGGGGCTGGAAATTCGTACTACGGCCGATGGCGAAAT CCTCCATGTCATCACCGCTCAGGCGGGTCGCAATAGTGTGCGAGTGTTGCACTGGAAAGCCGGAAAACCGGGCATTATTA CGAACGATCAGGTGCGTTACAGCCTGGGTGATCATCTGGGCTCGAGCACGCTGGAACTGGATCAGCAAGGCGGCCTGATC AGCCAGGAAAGCTATTACCCTTTCGGCGGCACGGCCTGGTGGGCGGCGCGCAGCGCAGTGGAAGCGAAGTACAAGACCGT GCGTTATTCGGGCAAGGAGCGCGACGCCAGCGGGCTTTATTACTACGGGTTCAGGTATTACGCGCCGTGGTTGCAGCGGT GGATCAGTCCGGATCCGGCGGGGGATGTGGATGGGTTGAATCTGTACGGGTACGTAAAAAACAGTCCAATCACCTATTAC GACAGGTTGGGATACATGGGGAAGCACGCGCTTGAGTCGCCGCCATCACCCGCTCGTCGAAAACCGATAACCTCAAATAG CTATGCCCTTGAAAATCAAGATGCGAGACCCGGTGTTTTGTGGGGCGATCAGGAGCCATTCCTCGGACCTGCTTACACAT TACCAGACAGATATCTTGTTTCCGGATTGGAAGAAAGATTGGCCGCAGTTGATAAACGTTCCGGCGAGGCGACCGCTATC GTAGCGACGATGTTTGACCATAACAGCAGCTTGGCATACGGCCCCTACGTCGTAGAATCAAAGCATCTTCAAAAAGAGGA CGACTTCCTCAACGAATACGCGCCCAACGAATGGACCTTTCGTTCAAATTACAAAAGAAGCGGAAGCAATGACTACCATG CCAATGACGTAGTCCGATACCAGTATAGAACCATCGCCCAAAAAACAAATACCCATGGCGTTTTACCTTCGGTTATAAAA AATAGCTTCGTCGTGAATAATGAGACGTTGACGAAAACTTTGACAATAGAAAACAAAACTCCGGAAATGCTACAGACTTT TCTTCAGGAAACGCCCAACGGCAAGCGAACTCAACGAGTACTTGACGACTTTGGCATGGAGGCTTTATGGGTTGATCGGC AGGGGGACTCAGAATTCCCCTTCGCTGACTTTATTGTTGCTGTACGCCCTAAACAGCAATCATATAGCCAGACTGGCTTT TACTAG Protein sequence : MNTTLHQHTPDVRAVDPRGLAIGNIAYWRSEAQQAMERRITRKTYNAAGHVSTQRDPRLDAPNLTTTYSLSGQPILIDSV DAHWRLLLLGEAGQTISGWDSNANQRHFEYDPLMRPVSVTEQHQVVERFAYGGPDSASHNLCGRLSRHDDTAGTSLSPDH GLSGKVLNQHRYFLRVSVTPDWPLAEAERDALLEPVVLQTCWRFNALGDALAQTDAMGNTQAFGMTVAGQLKAAGLTLAG ASQPQTLVSAIDYDAFNQVEQETAGNGVVSRYVYDLQDGRLIELSALSADGSVLQKLNYSYDPAGNVLLINDASQPDRYC DNQLIEPISRYRYDTLYQLIEATGREVRNGASHGPALPGLQPVPTLDPCQVSNYKQHYSYDAAGNLLQMRHEGARNFTRN MHVAPDSNRSLPDDDGDVDFATSFDANGNLLQLVRGQVMGWDVRNQLQHITTVQREDGSSDDERYVYDGQGQRCRKISTA QASGRMLINEVRYLPGLEIRTTADGEILHVITAQAGRNSVRVLHWKAGKPGIITNDQVRYSLGDHLGSSTLELDQQGGLI SQESYYPFGGTAWWAARSAVEAKYKTVRYSGKERDASGLYYYGFRYYAPWLQRWISPDPAGDVDGLNLYGYVKNSPITYY DRLGYMGKHALESPPSPARRKPITSNSYALENQDARPGVLWGDQEPFLGPAYTLPDRYLVSGLEERLAAVDKRSGEATAI VATMFDHNSSLAYGPYVVESKHLQKEDDFLNEYAPNEWTFRSNYKRSGSNDYHANDVVRYQYRTIAQKTNTHGVLPSVIK NSFVVNNETLTKTLTIENKTPEMLQTFLQETPNGKRTQRVLDDFGMEALWVDRQGDSEFPFADFIVAVRPKQQSYSQTGF Y |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| TccC3 | AAO17204.1 | TccC3 | Virulence | tcd island | Protein | 4e-94 | 42 |
| TccC4 | AAO17196.1 | TccC4 | Virulence | tcd island | Protein | 1e-95 | 42 |
| tccC | CAI77380.1 | putative insecticidal toxin complex protein | Not tested | tc-PAIYe | Protein | 1e-106 | 41 |
| TccC5 | AAO17210.1 | TccC5 | Virulence | tcd island | Protein | 2e-89 | 41 |
