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Name : Psyr_3636 (Psyr_3636) Accession : YP_236706.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4316968 - 4318962 bp Length : 1995 bp Strand : - Note : - DNA sequence : ATGAGCAGGTTGCGGGCCAGGTTACTGGCTCTACCACGCCGCAAAAAACGAATAATTCAGGTTGCTGCCGACGTTATTCT GGTCTGGCTGGCTCTGTGGATGGCGTTTGTCGTACGACTGGGTATCGATGAGCTGATCAATCCTCTCGAGAAGCACACCT GGCTGTTCATCAGTGCGCCTGTTGCGGCTATCCCGCTGTTCATCCGGTTCGGCATGTACCGCGCAGTGATGCGCTATTTC GGCAATGATGCGCTGATTGCCATCATCAAGGCCGTCACGATGTCGTCGTTGATCCTTGGTTGTATGGTTTACGTTTACAG TAATCACCAGCAATTGGTCCCGCGCTCGGTGATCTTCAATTACTGGTGGCTGAGCATGGTCATGATTGGCGGTCTGCGAC TGGCCATGCGGCAGTACTTTCTCGGCGACTGGTTCGCTGCAGCGCAGCACGTGCCCTTCGCCAAGAGCGACAACGGTTTG CAGAAGGTCGCCATTTACGGCGCTGGTGCTGCGGGAAACCAGTTGGTCGCTGCATTGCGCATGGGGCGTCTGATGCATCC GGTGGCGTTCATCGATGATGATGAGTCGATTTCCAACCGGGTCATTTCCGGCCTTCAGGTCTACAAACCGCGAAACATCC AGCGAATGATAGATTCCACGGGGGCTCAGGAAATCCTGTTGGCAATCCCGTCATCGTCGCGTGGGCGACGTCGGGAAATC CTCGGTTTTCTGGAAGGCTTTCCGCTGCACGTACGAAGCGTTCCGGGTTTCATGGACCTGGCCGCTGGCAGGGTCAAGGT CGACGACCTTCAGGAAGTCGACATCGCAGACCTTCTGGGGCGTGATGCAGTCCCGGCCCGCGATAACCTGCTTGAGCACT GCATCAAGGGCAAAACGGTGCTGGTGACCGGCGCAGGCGGCTCGATCGGTTCTGAACTGTGCCGACAGATACTGCTGCTG AAACCTACCCAGTTACTGTTGCTGGACCATAGCGAGTTCAATCTCTACAGCATTCTCTCCGAGCTTGAACAGCGCTCGGC TCGCGAGTCACTCTCGGTTAAATTGCTGCCCATACTCGGTTCGGTGCGCAACCACCCCAAACTGCTGTCGATCATGAAAA CCTGGAAAGTCGACACGGTCTATCACGCTGCGGCCTACAAGCATGTGCCGATGGTCGAGCACAATATTGCCGAAGGCGTC ATCAACAATGTCGTGGGTACGCTCAATACCGCCCAGGCGGCGTTGCAGGCAGGGGTGTCCAACTTTGTCCTGATCTCCAC AGACAAGGCGGTCCGCCCGACCAATGTGATGGGCAGCACCAAACGCCTCGCCGAATTGATATTGCAGGCACTGAGCCGCG AAACCGCGCCAGTGATCTTCGGTGACAAGGCCAATGTCTATCAGGTCAACAAGACCCGCTTTACCATGGTTCGCTTCGGC AACGTGCTGGGCTCGTCCGGTTCGGTGATTCCGCTGTTCCACAAGCAGATCCAGTCAGGCGGGCCGCTGACGGTGACGCA TCCCAAGATCACCCGCTATTTCATGACCATCCCCGAAGCCGCTCAGTTGGTCATTCAGGCGGGCTCCATGGGGCATGGCG GCGACGTTTTCGTTCTCGATATGGGTGAGCCGGTCAAGATTGTCGAACTGGCCGAGAAGATGATCCACCTGTCCGGTCTG GCCATTCGCTCGGAGAAAAACCCGCACGGTGATATCTCCATCGAGTTCACCGGGCTGCGTCCTGGCGAAAAACTCTATGA AGAGCTGTTGATCGGCGACAACGTGGTTGCCACCGAGCACCCGATGATCATGAGTGCAAACGAAGATTGCCTGCCGTGGG ATGTATTGAAAGGCCGCCTGACAAAACTGCTGGATGCGGTCGACCGCGACGATTACACCAGCGTGCGTCAGTTGCTGCGC GAAACGGTAAACGGTTATACGCCAGAGGGTGAAATCGTTGACTGGATGTATCAGGAACGCAGCGGCGAAACGTGA Protein sequence : MSRLRARLLALPRRKKRIIQVAADVILVWLALWMAFVVRLGIDELINPLEKHTWLFISAPVAAIPLFIRFGMYRAVMRYF GNDALIAIIKAVTMSSLILGCMVYVYSNHQQLVPRSVIFNYWWLSMVMIGGLRLAMRQYFLGDWFAAAQHVPFAKSDNGL QKVAIYGAGAAGNQLVAALRMGRLMHPVAFIDDDESISNRVISGLQVYKPRNIQRMIDSTGAQEILLAIPSSSRGRRREI LGFLEGFPLHVRSVPGFMDLAAGRVKVDDLQEVDIADLLGRDAVPARDNLLEHCIKGKTVLVTGAGGSIGSELCRQILLL KPTQLLLLDHSEFNLYSILSELEQRSARESLSVKLLPILGSVRNHPKLLSIMKTWKVDTVYHAAAYKHVPMVEHNIAEGV INNVVGTLNTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAELILQALSRETAPVIFGDKANVYQVNKTRFTMVRFG NVLGSSGSVIPLFHKQIQSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGHGGDVFVLDMGEPVKIVELAEKMIHLSGL AIRSEKNPHGDISIEFTGLRPGEKLYEELLIGDNVVATEHPMIMSANEDCLPWDVLKGRLTKLLDAVDRDDYTSVRQLLR ETVNGYTPEGEIVDWMYQERSGET |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 4e-78 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 9e-77 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Psyr_3636 | YP_236706.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-117 | 46 |
| Psyr_3636 | YP_236706.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 5e-77 | 43 |
