Gene Information

Name : Psyr_3374 (Psyr_3374)
Accession : YP_236444.1
Strain : Pseudomonas syringae B728a
Genome accession: NC_007005
Putative virulence/resistance : Virulence
Product : heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4032942 - 4033631 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
ATGCATATCCTGCTAATTGAAGATGACACCAAAACCGGCGAATACCTGAAGAAGGGACTGGGCGAATCCGGCTACGTGGT
CGACTGGACGCAGCACGGTGCCGACGGCCTGCATCTGGCGCTGGAAAACCGCTATGACCTCATCGTGCTGGACGTGATGC
TGCCAGGCATCGACGGCTGGCAGATCATCGAAGTCCTGCGCGCCAGGCAGGACGTGCCAGTGCTGTTTCTGACCGCGCGC
GACCAGTTGCAGGACCGGATTCGCGGCCTGGAACTGGGTGCCGACGATTATCTGGTCAAGCCGTTTTCCTTCACCGAACT
GCTGCTGCGCATCCGCACCATCCTGCGCCGCGGCGTGGTACGCGAGGCGGACCACTTTCATCTGGCCGACCTGGAACTGG
ACCTGCTGCGCCGCCGCGTAACGCGCCAGCAGCAGGTCATCGTGCTGACCAACAAGGAGTTCGCTCTGCTGCACCTGTTA
TTGCGCCGCGAAGGCGACGTACTGTCCAGGGCACAGATCGCCTCGGAAGTCTGGGACATGAATTTCGACAGCGACACCAA
TGTGGTGGACGTCGCCATCAAGCGCCTGCGCAGCAAGGTCGACCTGCCCTACCCGGTCAAGCTCATCCACACCGTGCGTG
GCATCGGTTATGTGTGCGAGGTGCGGCCATGCGACGCCAGCCTTCCCTGA

Protein sequence : 
MHILLIEDDTKTGEYLKKGLGESGYVVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIEVLRARQDVPVLFLTAR
DQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLL
LRREGDVLSRAQIASEVWDMNFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEVRPCDASLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-45 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-44 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_3374 YP_236444.1 heavy metal response regulator BAC0197 Protein 8e-57 64
Psyr_3374 YP_236444.1 heavy metal response regulator BAC0125 Protein 2e-55 63
Psyr_3374 YP_236444.1 heavy metal response regulator BAC0083 Protein 4e-48 59
Psyr_3374 YP_236444.1 heavy metal response regulator BAC0308 Protein 1e-46 58
Psyr_3374 YP_236444.1 heavy metal response regulator BAC0111 Protein 6e-51 58
Psyr_3374 YP_236444.1 heavy metal response regulator BAC0638 Protein 2e-42 57
Psyr_3374 YP_236444.1 heavy metal response regulator BAC0347 Protein 3e-43 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_3374 YP_236444.1 heavy metal response regulator VFG0596 Protein 4e-46 57
Psyr_3374 YP_236444.1 heavy metal response regulator VFG1390 Protein 6e-27 43
Psyr_3374 YP_236444.1 heavy metal response regulator VFG1389 Protein 1e-23 43
Psyr_3374 YP_236444.1 heavy metal response regulator VFG1386 Protein 1e-23 41