|
Name : Psyr_3175 (Psyr_3175) Accession : YP_236245.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 3802292 - 3803572 bp Length : 1281 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTCGATTCCAAACTGTTACGTACTCAACTTCAGGACGTAGCGGATCGCCTGGCTTCCCGTGGCTTCACTCTGGATGT GGCGCGCATTGAATCGCTGGAAGCCCAGCGCAAGGTAGTGCAGACCCGCACCGAACAGCTGCAGGCCGAGCGCAATGCCC GTTCCAAATCCATTGGTCAGGCCAAGCAGCGCGGTGAGGATATTGCGCCGTTGATGGCTGATGTCGAGCGCATGGGCAAC GAGCTGAGCGAAGGCAAGGTCGAGCTGGACGGCATTCAGGCCGAACTGGATGCGCTGGTGCTGAGCATTCCGAACCTGCC TCATGAGTCCGTGCCGGTCGGTGCCGACGAAGAAGGCAACGTCGAAGTACGTCGCTGGGGTACGCCGACGTCATTCGATT TCGAGGTCAAGGATCACGTTGCGCTGGGCGAGAAGTTCGGCTGGCTGGATTTCGAGACTGCCGCCAAGCTGTCCGGCGCG CGCTTTGCGCTGCTGCGTGGCCCGATCGCACGTCTGCACCGTGCCCTCGCACAATTCATGATCAATCTGCACATCAACGA GCACGGCTACGAAGAGACCTACACGCCCTATCTGGTGCAGGCTCCAGCGTTGCAGGGCACAGGTCAGCTGCCCAAGTTCG AGGAAGACCTGTTCAAGATCTCCCGCGAAGGTGAAGCCGACCTGTACCTGATTCCGACTGCCGAAGTGTCGCTGACCAAT ATCGTGTCGGGTGAAATCCTCGACGCCAAACAGCTGCCTCTCAAGTTTGTCGCCCATACCCCTTGCTTCCGCAGTGAAGC GGGCGCGTCCGGGCGTGATACCCGCGGCATGATCCGCCAGCACCAGTTCGACAAGGTCGAGATGGTCCAGATCGTTGCGC CTGACGACTCCATGGCCGCGCTCGAGTCGCTGACCGGCAACGCCGAACGCGTGCTGCAACTGCTTGAACTGCCTTATCGC ACGCTGGCGCTGTGCACCGGCGACATGGGTTTCAGCGCGGTGAAGACCTACGACCTGGAAGTCTGGATTCCGAGCCAGGA CAAATATCGCGAAATCTCTTCCTGCTCCAACTGCGGTGATTTCCAGGCGCGCCGCATGCAGGCTCGCTGGCGCAACCCGG AAACCGGCAAGCCGGAGCTGGTCCACACCCTCAACGGGTCGGGCCTGGCGGTAGGCCGCACACTGGTGGCGGTGCTGGAA AACTATCAGCAGGCGGACGGTTCGATTCGTGTGCCTGAGGTGCTCAAGCCTTACATGGGCGGCCTTGAGGTCATCGGTTA A Protein sequence : MLDSKLLRTQLQDVADRLASRGFTLDVARIESLEAQRKVVQTRTEQLQAERNARSKSIGQAKQRGEDIAPLMADVERMGN ELSEGKVELDGIQAELDALVLSIPNLPHESVPVGADEEGNVEVRRWGTPTSFDFEVKDHVALGEKFGWLDFETAAKLSGA RFALLRGPIARLHRALAQFMINLHINEHGYEETYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADLYLIPTAEVSLTN IVSGEILDAKQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMVQIVAPDDSMAALESLTGNAERVLQLLELPYR TLALCTGDMGFSAVKTYDLEVWIPSQDKYREISSCSNCGDFQARRMQARWRNPETGKPELVHTLNGSGLAVGRTLVAVLE NYQQADGSIRVPEVLKPYMGGLEVIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 4e-107 | 55 |
