Gene Information

Name : Psyr_3127 (Psyr_3127)
Accession : YP_236197.1
Strain : Pseudomonas syringae B728a
Genome accession: NC_007005
Putative virulence/resistance : Virulence
Product : response regulator receiver:transcriptional regulatory protein, C-terminal
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3749615 - 3750298 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGACCCGAATTCTGGCAATCGAAGATGATGCCATCACTGCAAAGGAAATCGTGACCGAACTCAGCAGCCACGGACTGGA
AGTGGACTGGGTCGACAATGGCCGTGACGGCCTGGCGCGTGCAGTGAGTGGCGATTATGACCTTATTACCCTGGACCGCA
TGTTGCCGGAGATGGATGGTCTGACCATCGTCACCCACTTGCGTGCCCAGGGCATTTCCACGCCGATCCTGATGATCAGC
GCCCTTTCCGACGTGGACGAGCGCGTTCGCGGCCTGCGTGCCGGAGGGGACGACTATCTGCCCAAGCCCTTCGCGTCGGA
TGAGATGGCTGCGCGCGTCGAGGTGTTATTGCGACGCAGTAACCCGGTCAGTGCCGCCAAGACGGTATTGCAGGTTGCCG
ACCTGGAACTGAACCTGATCACCCGGGAAGCGTGTCGCGGCGGCGAGCCGCTGACCCTGCTGCCCACCGAATTCAAGCTG
CTTGAGTTTCTGATGCGCAACAGCGGACAGATCATCACCCGAATGATGATTTTTCAGGAAGTCTGGGGCTACCACTTCGA
TCCGGGCACCAACCTGATCGACGTTCACATCGGCCGTCTGCGCAAGAAGATCGACCAACCCGGTACCGCACAGCTCATTC
AGACCGTGCGAGGATCCGGCTATGTCATTGCCGAACCCGTCTGA

Protein sequence : 
MTRILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLTIVTHLRAQGISTPILMIS
ALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVADLELNLITREACRGGEPLTLLPTEFKL
LEFLMRNSGQIITRMMIFQEVWGYHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal BAC0125 Protein 3e-41 46
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal BAC0111 Protein 3e-45 46
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal BAC0197 Protein 9e-43 46
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal BAC0347 Protein 2e-42 44
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal BAC0308 Protein 2e-41 44
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal HE999704.1.gene1528. Protein 2e-28 42
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal BAC0083 Protein 1e-42 42
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal BAC0638 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal VFG1390 Protein 1e-40 43
Psyr_3127 YP_236197.1 response regulator receiver:transcriptional regulatory protein, C-terminal VFG0596 Protein 8e-34 42