Gene Information

Name : Psyr_2670 (Psyr_2670)
Accession : YP_235747.1
Strain : Pseudomonas syringae B728a
Genome accession: NC_007005
Putative virulence/resistance : Resistance
Product : aminoglycoside/hydroxyurea antibiotic resistance kinase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG3570
EC number : -
Position : 3241417 - 3242247 bp
Length : 831 bp
Strand : +
Note : -

DNA sequence :
ATGCCGCCTGTTTTTCCTGCTCATTGGCACGTTTCGCAACCTGTTCTCATTGCGGACACCTTTTCCAGCCTCGTTTGGAA
AGTTTCATTGCCAGACGGGACTCCTGCAATCGTCAAGGGATTGAAACCTATAGAAGACATTGCTGATGAACTGCGCGGGG
CCGACTATCTGGTATGGCGCAATGGGAGGGGAGCAGTCCGGTTGCTCGGTCGTGAGAACAATCTGATGTTGCTCGAATAT
GCCGGGGAGCGAATGCTCTCTCACATCGTTGCCGAGCACGGCGACTACCAGGCGACCGAAATTGCAGCGGAACTAATGGC
GAAGCTGTATGCCGCATCTGAGGAACCCCTGCCTTCTGCCCTTCTCCCGATCCGGGATCGCTTTGCAGCTTTGTTTCAGC
GGGCGCGCGATGATCAAAACGCAGGTTGTCAAACTGACTACGTCCACGCGGCGATTATAGCCGATCAAATGATGAGCAAT
GCCTCGGAACTGCGTGGGCTACATGGCGATCTGCATCATGAAAACATCATGTTCTCCAGTCGCGGCTGGCTGGTGATAGA
TCCCGTCGGTCTGGTCGGTGAAGTGGGCTTTGGCGCCGCCAATATGTTCTACGATCCGGCTGACAGAGACGACCTTTGTC
TCGATCCTAGACGCATTGCACAGATGGCGGACGCATTCTCTCGTGCGCTGGACGTCGATCCGCGTCGCCTGCTCGACCAG
GCGTACGCTTATGGGTGCCTTTCCGCAGCTTGGAACGCGGATGGAGAAGAGGAGCAACGCGATCTAGCTATCGCGGCCGC
GATCAAGCAGGTGCGACAGACGTCATACTAG

Protein sequence :
MPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEY
AGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSN
ASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRRLLDQ
AYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00281 YP_008207746.1 Streptomycin 6-kinase Not tested AbaR25 Protein 4e-127 100
BJAB0868_00285 YP_008211611.1 Streptomycin 6-kinase Not tested AbaR26 Protein 4e-127 100
strB AEA34676.1 aminoglycoside resistance protein B Not tested Not named Protein 3e-127 100
strB YP_001800933.1 aminoglycoside-6-phosphotransferase Not tested Not named Protein 4e-127 100
strB AGK07030.1 StrB streptomycin phosphotransferase Not tested SGI1 Protein 4e-127 100
strB AEQ20908.1 StrB, APH(6)-Id streptomycin(6) phosphtransferase Not tested Tn6166 Protein 5e-127 100
strB AGK07088.1 StrB streptomycin phosphotransferase Not tested SGI1 Protein 4e-127 100
strB AEZ06048.1 StrB, APH(6)-Id, streptomycin(6) phosphotransferase Not tested Tn6167 Protein 5e-127 100
strB AFV47971.1 streptomycin (6) phosphotransferase StrB Not tested AbaR25 Protein 4e-127 100
strB AFV47999.1 streptomycin (6) phosphotransferase StrB Not tested delta-AbaR25 Protein 4e-127 100
ABK1_0257 YP_005512829.1 Streptomycin resistance protein B Not tested AbaR4d Protein 5e-127 100
ABZJ_00265 YP_005524221.1 streptomycin 3''-kinase Not tested AbaR22 Protein 5e-127 100
strB ACK44538.1 StrB Not tested SGI1 Protein 4e-127 100
strB YP_005176179.1 aminoglycoside 6-phosphotransferase protein Not tested ICEPmu1 Protein 5e-127 100
strB AFH57206.1 streptomycin resistance protein Not tested AbaR4a Protein 4e-127 100
strB CAJ77026.1 Streptomycin phosphotransferase B Not tested AbaR1 Protein 1e-124 99

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_2670 YP_235747.1 aminoglycoside/hydroxyurea antibiotic resistance kinase DQ464881.1.gene5.p01 Protein 3e-127 100
Psyr_2670 YP_235747.1 aminoglycoside/hydroxyurea antibiotic resistance kinase NC_010410.6003392.p0 Protein 5e-125 99
Psyr_2670 YP_235747.1 aminoglycoside/hydroxyurea antibiotic resistance kinase AF024602.1.gene6.p01 Protein 3e-127 99
Psyr_2670 YP_235747.1 aminoglycoside/hydroxyurea antibiotic resistance kinase AJ313522.gene.p01 Protein 3e-111 91