Gene Information

Name : Psyr_2593 (Psyr_2593)
Accession : YP_235670.1
Strain : Pseudomonas syringae B728a
Genome accession: NC_007005
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3039718 - 3040509 bp
Length : 792 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGTCAATCGCAACCCACGACCTGACCCTGAGTTACCAGCGGCAGGTGATCATCGACAGCCTTGATCTGCAGTTACC
CGCAGGCCAGGTGACCGTGCTGATCGGCAGTAACGGTTGCGGCAAAAGCACCTTGCTCAAATCCCTGGCGCGCCTGCTCA
AACCCCAGCAGGGCACCGTCGTGCTCAACGGTGCCGACATCCATCAGAAGTCCACTGCGACCGTCGCGCGTGAACTGGCG
ATTCTGCCGCAGATGCCCAGCGCACCGGAAGGCATCAGCGTGCGGCAACTGGTGGCGCTGGGGCGTTATCCCTATCAGAA
CTGGATGCAGCAATGGTCCGCCGAGGATGAAGCCATGGTCGCACGGGCTCTGGCGCAGACCGGCATGCAGGAACTGGCCG
ACAGACCCGTCGATGCCCTGTCAGGTGGTCAGCGTCAGCGCGCATGGATCGCCATGACCCTGGCGCAGGATACCGACATT
GTATTGCTGGACGAGCCGACGACCTTTCTCGATCTGGCTCATCAGATCGAAGTGCTGGACCTGTTGCGCGACCTGAATCG
GCAAGAGGGCAAGACCATCGTGATGGTCCTGCATGACCTGAATCTGGCCTGCCGTTACGCCGATCACATGGTCGCTGTTC
ACGAACGCAGCGCCTTCGCCCAAGGGCGTCCGGCGGATATCCTCAGCGAGGCGCTGGTCAAGCAGGTCTTCGGCCTCAAC
TGCCGGATCATCGCCGATCCATTCTTTGGTACGCCGTTGTGCATTCCCTTTGGCCGGGAACTGCCGCAATGA

Protein sequence : 
MASIATHDLTLSYQRQVIIDSLDLQLPAGQVTVLIGSNGCGKSTLLKSLARLLKPQQGTVVLNGADIHQKSTATVARELA
ILPQMPSAPEGISVRQLVALGRYPYQNWMQQWSAEDEAMVARALAQTGMQELADRPVDALSGGQRQRAWIAMTLAQDTDI
VLLDEPTTFLDLAHQIEVLDLLRDLNRQEGKTIVMVLHDLNLACRYADHMVAVHERSAFAQGRPADILSEALVKQVFGLN
CRIIADPFFGTPLCIPFGRELPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-62 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-54 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-53 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-60 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-60 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-56 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-56 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-56 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-56 46
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-50 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-50 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-50 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-50 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_2593 YP_235670.1 ABC transporter BAC0164 Protein 6e-54 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_2593 YP_235670.1 ABC transporter VFG0925 Protein 2e-66 50
Psyr_2593 YP_235670.1 ABC transporter VFG1042 Protein 5e-54 47