|
Name : Psyr_2244 (Psyr_2244) Accession : YP_235325.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 2608140 - 2610110 bp Length : 1971 bp Strand : - Note : decatenates replicating daughter chromosomes DNA sequence : ATGCGGCTGTTTCTCTGCGAAAAACCCTCCCAGGCCAAAGATATTGCGGCTGCGCTCGGCGCAACCCGGCGTGGCGACGG CTGCTGGGTGGGTGCCAATGCGACGGTAACCTGGTGCATCGGCCACCTGCTGGAAACCGCCCCGCCCGATGCCTACGATG CACGTTACAAACGCTGGGTACTGGAAGACCTGCCCATCGTGCCGGAAAAATGGAAGATGCTGGTCAAGCCCAGAACCGCC AGCCAGTTCAAGGCAGTCAAGCGGCTGCTGGGTGAAGCGACGGAGCTGGTGATTGCCACCGACGCCGACCGTGAGGGTGA AATGATCGCCCGCGAACTGATCGAGCACTGTCGCTATCGCGGGCCGATTCAGCGTTTGTGGCTGTCGGCACTGGATGACG CCTCGATCCGCAAGGCACTGGCGGCGCTCAAGCCCGGTGCCGATACGTTCAGCCTGTATCACTCGGCACTGGGCCGATCA CGTGCCGACTGGCTGATCGGCATGAACATGAGCCGCCTGTTCACCCTGCTGGGTCGGCAATCCGGTTATCAGGGCGTCCT TCCGGTCGGCCGGGTACAAACCCCGACCCTGCGACTGGTGGTGGACCGTGATCGCAGTATCGCCAACTTTGTCCCGGCGC CCTATTGGGCTATCGACGTCAGGCTGCTGCATGACAATCAGGCGTTCATTGCCCAGTGGCGCGCACCCTCGGATGCCTGC GACGATCAGGACCGCTGCCTGAATCAGGCGCTGGCGCAACAGGCTGCGCAAGCGATGCGCGCCGCAGCCAGCGCACGGCT GGTCAAGCTGCGCACCGAGCGCATTCGCGAAGCGGCGCCCTTGCCGTTCGACCTGGGCACCCTGCAGGAAATCTGCTCGA AAAAGCTCGGGCTCGGCGCGCAGGAAACCCTGGACATCGCCCAGTCCCTGTATGAAACCCACAAGGTCATCACCTACCCG CGCAGCGATTGCGGATACCTGCCGAACAGTCAGCACGGTGAAGCCGCAGGCATCATCGCGGCGCTGTGCAAGGCCGACCC TGCGCTGGCAAACCTGTCGCCGCACCTCGACCCACAACGTCGGTCACGGGCCTGGAATGACAGCAAAGTGACGGCCCACC ACGGCATCATTCCCACCGCAGCTGTACGCGGCGTAGAACGTCTGAGCGGTAAACCGCGAGCGGTGTACACCCTGATCAGG GCGCGTTATCTGGCTCAGTTTCTGCCCAACCATGAATACGACCGCACCCAGGCCGATTTCGACTGTGCAGGCCACGCGCT GCGTGCGGTGGGCAAGCAGATTGTCGAGCCGGGCTGGAAGCGTGCAATGCCCGAAGCGCTGGCCCCGGCCAAGGGTCGCG AAGCGCCTGCCCCGCAGCCGTTGCCGGCATTGTTTCAGGGCTGCGAGTGTGCAGTCGCCGAGGTCATCCTCAAGGACCTC TGGACCCAGCCGCCCAAGCCGTTCACCGAGGGAGACCTGATCAAGGCGATGAAGAACGTCGCCAAACTGGTGGAAGACCC GCTGCTCAAACAGAAGCTCAAGGACACCACCGGCATCGGCACCGAAGCCACCCGCGCCGGGATCATTCAAGGCCTGCTGG ACCGTGGCTACCTGACCAAGCAGGGCAAGTCGCTGTGCGCAGCTCCGGCAGCCTTCAGCCTGATCGACGCCGTGCCCCGT GCCATCGCCGATCCGGGCACCACCGCCATCTGGGAACAGGCGCTGGACATGGTCCAGAGCGGCGAAATGAGCCTTGAAGA GTTCGTCGCCAAACAGGCGGCGTGGATGAGCAAACAGGTGAGCCGTTGCGTCGGCATGCGTATGAGCATCAGCGGACCGG CCAGCCCGGCAGGCGTTAAACCGCCCTGGAAGAAAAAACGCAAGACCACAACGCGCGTCGCCAAGACCGCCACAACGGAC ACTGCGGCGAAAAAGCCGCGGCGTGCTGTCAGACCGGCCGCCAAGGCGTAG Protein sequence : MRLFLCEKPSQAKDIAAALGATRRGDGCWVGANATVTWCIGHLLETAPPDAYDARYKRWVLEDLPIVPEKWKMLVKPRTA SQFKAVKRLLGEATELVIATDADREGEMIARELIEHCRYRGPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRS RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPAPYWAIDVRLLHDNQAFIAQWRAPSDAC DDQDRCLNQALAQQAAQAMRAAASARLVKLRTERIREAAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYP RSDCGYLPNSQHGEAAGIIAALCKADPALANLSPHLDPQRRSRAWNDSKVTAHHGIIPTAAVRGVERLSGKPRAVYTLIR ARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWKRAMPEALAPAKGREAPAPQPLPALFQGCECAVAEVILKDL WTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLTKQGKSLCAAPAAFSLIDAVPR AIADPGTTAIWEQALDMVQSGEMSLEEFVAKQAAWMSKQVSRCVGMRMSISGPASPAGVKPPWKKKRKTTTRVAKTATTD TAAKKPRRAVRPAAKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 62 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 62 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 62 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 8e-143 | 49 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-142 | 49 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-142 | 49 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 7e-142 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 5e-142 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 8e-109 | 42 |
