Gene Information

Name : Psyr_1497 (Psyr_1497)
Accession : YP_234585.1
Strain : Pseudomonas syringae B728a
Genome accession: NC_007005
Putative virulence/resistance : Virulence
Product : heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1685719 - 1686405 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence :

ATGAAACTGCTGGTAGCCGAAGACGAACCTAAAACTGGAATCTATCTGCAGCAAGGCCTGCGGGAGGCTGGCTTCAATGT
GGACCGCGTGGTCACAGGCACAGATGCCGTTGACCAGGCGCTCAATGAAGCCTATGACCTGTTGATTCTCGACGTGATGA
TGCCAGGCCTCGATGGCTGGGAAGTCATCAGACGCCTTCGCACCGTTGGCCAATCCGTACCGGTACTGTTTCTGACCGCA
CGCGACGGGGTAGACGACCGAGTCAAGGGGCTGGAGCTGGGCGCCGATGATTACCTGGTTAAGCCATTTGCTTTTTCAGA
ATTGCTGGCACGGGTGCGAACGCTACTGCGGCGCGGCAGCAGCAACCTCCCGGTTCAAACTAGCTTGCAAATCGGAGACC
TTCAGGTGGATTTGCTCAAGCGTCGAGCCACCCGGGGCGGCAAGCGAATCGACCTCACGGCCAAAGAGTTTGCACTGCTG
GAATTGCTGATGCGCCGGCAAGGTGAGGTGCTGTCCAAATCGCTGATAGCTTCCCAAGTCTGGGACATGAATTTTGACAG
CGACACAAATGTCATTGAAGTGGCCATACGGCGGTTAAGGGCCAAGATTGACGATGACTTCGAGGCAAAACTGCTGCATA
CCTGCCGGGGAATGGGTTACATGCTAGACGCGCAGGACGAAGGATGA

Protein sequence :

MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWEVIRRLRTVGQSVPVLFLTA
RDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGSSNLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALL
ELLMRRQGEVLSKSLIASQVWDMNFDSDTNVIEVAIRRLRAKIDDDFEAKLLHTCRGMGYMLDAQDEG

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	7e-57	58
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	1e-56	57

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Psyr_1497	YP_234585.1	heavy metal response regulator	BAC0083	Protein	4e-99	97
Psyr_1497	YP_234585.1	heavy metal response regulator	BAC0638	Protein	6e-79	80
Psyr_1497	YP_234585.1	heavy metal response regulator	BAC0197	Protein	1e-68	64
Psyr_1497	YP_234585.1	heavy metal response regulator	BAC0308	Protein	3e-66	61
Psyr_1497	YP_234585.1	heavy metal response regulator	BAC0111	Protein	2e-70	61
Psyr_1497	YP_234585.1	heavy metal response regulator	BAC0125	Protein	3e-65	60
Psyr_1497	YP_234585.1	heavy metal response regulator	BAC0347	Protein	1e-63	57
Psyr_1497	YP_234585.1	heavy metal response regulator	HE999704.1.gene1528.	Protein	1e-29	42
Psyr_1497	YP_234585.1	heavy metal response regulator	NC_002516.2.879194.p	Protein	3e-30	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Psyr_1497	YP_234585.1	heavy metal response regulator	VFG0596	Protein	3e-57	58
Psyr_1497	YP_234585.1	heavy metal response regulator	VFG1389	Protein	4e-40	47
Psyr_1497	YP_234585.1	heavy metal response regulator	VFG1390	Protein	1e-42	45
Psyr_1497	YP_234585.1	heavy metal response regulator	VFG1386	Protein	3e-38	43