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Name : Psyr_0142 (Psyr_0142) Accession : YP_233253.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Unknown Product : ABC transporter Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 153433 - 155016 bp Length : 1584 bp Strand : + Note : - DNA sequence : ATGCACGACAACCTGATTGAAATTCGCGACCTGCGGGTCGCCTTCAACGGCCACGAAGTGGTGCATGGCGTCAGCCTCGA CATCCGCCGTGGCGAGTGCCTGGCACTGGTGGGCGAATCCGGCTCGGGCAAGTCGGTCACGGCGCATTCGATTCTGCGTC TGTTGCCGGCGAAAACCGTCAGTACCCAGGGCTCGATTCATTACGACGGGCTGGATTTGGTGACTGCCAGCGACAAGCAG TTGCGCAGCCTGCGCGGCAACCGGGTGGCGATGATTTTTCAGGAGCCCATGAGTTCGCTGAACCCGCTGCACACGGTCGA AAAACAGATCGTCGAAATCCTCGTGACCCACAAGGGCCTGAAGGGCAAGGCCGCGCTGAGCCGCACCCTGGAGCTGCTGG AACTGGTCGGTATTCGTGATCCGCTGTCACGTCTCAAGGCGTATCCGCATCAACTGTCGGGCGGGCAACGGCAGCGCATC ATGATTGCCATGGCGTTGGCCAACGAGCCGGATCTGCTGATCGCCGACGAGCCGACCACCGCGCTGGATGTGACCGTGCA GGTGAAGATTCTGGAGTTGCTCAAGTCCCTGCAGCAGCGGCTGAACATGTCGCTGCTGCTGATCAGCCACGACCTCAATC TGGTGCGGCGCATCGCCCAGCGGGTCTGCGTGATGCGTGAGGGCGAGATCGTCGAGCAGGCCGATTGCCAGACCCTGTTC GACAGCCCGCAACACCCGTACAGCCGTCTGCTGATCAATGCCGAGCCGGATGGTGAACCGGTGCCGTCCACGCACAGCAA CACGCTGCTGTCGGTGCAGGACCTGAAGGTCTGGTTCCCGCTGGGCAAGGCCTGGTTCAAGCGTGAGCCGCAGTACGTGA AAGCGGTGGACGGGGTGAGTTTCGAGCTGCTCAAGGGCAAGACCCTGGGCATTGTCGGCGAGTCGGGTTCGGGTAAATCG ACCCTGGGCCAGGCGATTTTGCGCCTGGTCGATTCAGAGGGCAGCATCCGCTTCGGCACCAAGGAACTGAGCCTGCACAG CCAGCACCTGATGCGCCCGTTGCGCCGCCAGTTGCAGGTGGTGTTTCAGGACCCGTTCGGCAGCCTCAGCCCGCGCATGA CCGTGGAGCAGATCATTGCCGAGGGCCTGGTGACGCACAACATCGGTACGCCGAAAGAGCGTGAACAGACGGTGATCCGC GTGTTGCAGGAAGTCGGCCTGGACCCGGCCACCCGGCATCGTTACCCGCACGAGTTTTCCGGCGGTCAGCGCCAGCGTGT TTCCATCGCACGGGCGCTGGTGCTTGAGCCGGACCTGATCCTGCTCGACGAGCCGACCTCGGCGCTCGACCGGACCGTGC AAAAGCAGATCGTCGCCCTGCTGCGCGACCTGCAAATCCGGCATGGCCTGACGTACCTGTTCATCAGCCATGACCTGGCG GTGGTTCACGCCCTGGCCCATGACCTGATCGTCATCAAGGACGGCAAGGTGGTCGAGCAGGGTCCGTCCCGCGAGATCTT CGCCGCACCGCAGCAGGCCTACACTCAGGAACTGCTGCGTTCGTCGGGGCTGGTGTTCGCCTGA Protein sequence : MHDNLIEIRDLRVAFNGHEVVHGVSLDIRRGECLALVGESGSGKSVTAHSILRLLPAKTVSTQGSIHYDGLDLVTASDKQ LRSLRGNRVAMIFQEPMSSLNPLHTVEKQIVEILVTHKGLKGKAALSRTLELLELVGIRDPLSRLKAYPHQLSGGQRQRI MIAMALANEPDLLIADEPTTALDVTVQVKILELLKSLQQRLNMSLLLISHDLNLVRRIAQRVCVMREGEIVEQADCQTLF DSPQHPYSRLLINAEPDGEPVPSTHSNTLLSVQDLKVWFPLGKAWFKREPQYVKAVDGVSFELLKGKTLGIVGESGSGKS TLGQAILRLVDSEGSIRFGTKELSLHSQHLMRPLRRQLQVVFQDPFGSLSPRMTVEQIIAEGLVTHNIGTPKEREQTVIR VLQEVGLDPATRHRYPHEFSGGQRQRVSIARALVLEPDLILLDEPTSALDRTVQKQIVALLRDLQIRHGLTYLFISHDLA VVHALAHDLIVIKDGKVVEQGPSREIFAAPQQAYTQELLRSSGLVFA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 5e-87 | 43 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 5e-87 | 43 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 5e-87 | 43 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 5e-87 | 43 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 4e-101 | 43 |
