|
Name : lysS (Psyr_1311) Accession : YP_234400.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1488289 - 1489791 bp Length : 1503 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAGCGACCAACAACTCGACCCGCAAGCCCTGCAACAGGAAGAAAACACCCTGATCGCCTTGCGCAAGGAAAAGCTTGC TGCAGGCCGTGCCAAGGGTCAGGCCTTCCCCAATGACTTCCGCCGCGACAGCTACTGCAATGACCTGCAGAAACAGTACG TCGACAAGACCAAGGAAGAACTGGCAGAGGCAGCGATTCCGGTCAAGGTTGCCGGTCGCATCATGCTCAACCGTGGCTCG TTCATGGTGATCCAGGACATGACCGGGCGCATCCAGGTCTATGTCAACCGCAAGACCCTGCCCGAAGAAACCCTGGCCGA GGTGAAAACCTGGGATCTGGGCGACATCATCGCCGCCGAAGGTACCCTGGCACGCTCCGGCAAGGGCGACCTGTACGTCG AGATGACCAGCGTTCGCCTGCTGACCAAGTCCTTGCGTCCGCTGCCCGACAAGCACCACGGCCTGACCGACACCGAACAG CGCTACCGTCAGCGTTACGTCGACCTGATCGTCAACGAGGAAGTGCGTGAGACCTTCCGCGTGCGTTCGCAGGTCATCGC TCACATCCGCAGCTTCCTGATGAAGCGCGACTTCCTCGAAGTCGAAACGCCGATGCTGCAGACCATTCCGGGCGGCGCGG CGGCCAAGCCGTTCGAAACCCACCACAACGCGCTGGACATGGAAATGTTCCTGCGTATCGCCCCGGAGCTGTACCTCAAG CGTCTGGTGGTCGGTGGTTTCGAGAAGGTCTTCGAGATCAATCGCAACTTCCGTAACGAAGGTGTTTCGACCCGGCACAA CCCCGAGTTCACCATGCTCGAGTTCTACCAGGCCTACGCCGATTACGAAGACAACATGGACCTCACCGAGGAACTGTTCC GCGAACTGGCGCAACTGGTTCTGGGCAGCACCGATGTGCCTTATGGCGACAAGGTGTTCCACTTCGGCGAACCGTTCGTG CGCCTGTCGGTGTTCGACTCGATCCTCAAGTACAACCCTGAGCTGACCGTTGCCGACCTGCAGGACATCGACAAGGCGCG CGCCATTGCGAAAAAGGCCGGTGCCAAGGTGCTGGGCTTCGAAGGCCTGGGCAAATTGCAGGTGATGATTTTCGAAGAGC TGGTCGAGCACAAGCTGGAACAGCCGCACTTCATCACCCAGTACCCGTTTGAAGTGTCGCCGCTGGCGCGTCGCAACGAC GAAAACCCGAACGTCACCGACCGTTTCGAGCTGTTCATCGGTGGTCGCGAAATCGCCAATGCCTACTCCGAGCTCAACGA CGCCGAAGATCAGGCCGAACGCTTCCAGGCTCAGGTGGCCGACAAGGATGCCGGTGACGACGAAGCCATGCACTACGACG CCGACTTCGTTCGTGCGCTGGAGTACGGCATGCCGCCGACGGCAGGCGAGGGGATCGGTATCGATCGGTTGGTGATGTTG CTCACCGACTCGCCGTCGATTCGCGACGTGATCCTCTTCCCGCACATGCGCCCGCAAGCGTAA Protein sequence : MSDQQLDPQALQQEENTLIALRKEKLAAGRAKGQAFPNDFRRDSYCNDLQKQYVDKTKEELAEAAIPVKVAGRIMLNRGS FMVIQDMTGRIQVYVNRKTLPEETLAEVKTWDLGDIIAAEGTLARSGKGDLYVEMTSVRLLTKSLRPLPDKHHGLTDTEQ RYRQRYVDLIVNEEVRETFRVRSQVIAHIRSFLMKRDFLEVETPMLQTIPGGAAAKPFETHHNALDMEMFLRIAPELYLK RLVVGGFEKVFEINRNFRNEGVSTRHNPEFTMLEFYQAYADYEDNMDLTEELFRELAQLVLGSTDVPYGDKVFHFGEPFV RLSVFDSILKYNPELTVADLQDIDKARAIAKKAGAKVLGFEGLGKLQVMIFEELVEHKLEQPHFITQYPFEVSPLARRND ENPNVTDRFELFIGGREIANAYSELNDAEDQAERFQAQVADKDAGDDEAMHYDADFVRALEYGMPPTAGEGIGIDRLVML LTDSPSIRDVILFPHMRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-134 | 60 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 8e-78 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_234400.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-134 | 60 |
