|
Name : Psyr_1218 (Psyr_1218) Accession : YP_234310.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Virulence Product : type III helper protein HrpK1 Function : - COG functional category : - COG ID : - EC number : - Position : 1375465 - 1377777 bp Length : 2313 bp Strand : + Note : - DNA sequence : ATGGCAACCATGCGTATATCCAGTTCTCCCAGTCCTGCCCTTGGCAGCATCGTGAATCAACCCACCTCTGGCGAACTGGC TGCCGAGACGCCATTGGCCAAAGCCTCGCTTACGCAGGGCAGCGCAGGTGGTGGTCAGGCGTTTGTGCAGTTCGGCCAGG CCAACGACAGCCCCTCTTCCTTTTCAGGAACCGAGCAAAACGGCTCATCGCTGATGAGTCTGCTGACTCGCAGCAGCAGT AGTGACAGCACCTCCAGCGTCGATCAGGACAGTGAGGTGTCTCCGATGACATCGGTCTCGTCTACCGCGAGTGCGTCACC CACGACGGCCTCCAATCCGGCGAATGCCCCGAGCGCTACCGATGCAGCGTTTCTCGATAACTCCGAATACTCTTCGCCCG AGGCGCTCAAGCGCTGGGAACCGATGGTTGCCAACCTGCCGCCCGAAGAGCGCGAACAAGCCGCCAAAGAACTCAACCGG CCCATCGCCGCAGCGTGGATGGCCAGAGAGGATGGTCCCAACGCCGAAAAGGCGATGGCGTTCATCAATGCCAATCCCGC GTTGAAGACGGCGGTCGACGTCGGCAAGGACGGCGGTAATGCGGATGGCAAAATCACCAACAAAGACCTCAAGGCGTTCG CCAAAAACATGGAGAAGGCTGCCGACAATGCCGACAAGGACGTGGCCAAGTACATGGAAGATAACCCCGGCGCCGATCCT CAGTCCCTTGAAATGGTGCGCAGCGCAGCGGTGATGCGCGCCAATATGCCGTTGGCGACGGCTGCCGACCCTCATCATGC AGTCGGAGCGGCGGACAAGACCGATGTCGATGGCAATGTCAGCGCCGAGGGTCTGAAAGCGCTGATTAAAAGTAACCCCG GGTTGTCAGGTACGCTCAAACAGTCGTCCAACATGTGGTCGCAGGCGGGCTTCCTCAGCCAGGTGGATGAAGCCGGTCTG ACCGGGCGCAAGAAGGCTGCGCATAGCCCCGACCAAGTGTTCGATGCGTCCAATATGAGCGAGTGGATCAGAAAGAGCGC CCCCAAAAATGGTGGCCAGTTCGCCAGCATGCTCAGCGACGCCGCGACGTTGAATTCGGTAGCCGGTATCGATATCAGCA AGCTCAACGCGCAGGTGTTCGAGAAGCCCAAGGCTTACACCGGCGCGCAGAAAGCCGCTGTGATGATCAAGTTGCAGCAG ACTCAGCAAAGCGTGATAGCCGGGCGGGATTTGCGCAATACCGAGAAGACCGAGGCGGGCCTTAACGAGCGAATCGCCCA GTTGCAAGCCGATCCCGACGTTCAGGAGTACCTCAACAAAAGCATTCCTGAACAGGAGCGCAGTCTGGTTCGCAGCGATT CAGCGCTGCAAAAGGCCGTGACTGAGCAGGCTCAAAACGTCAATAGCGGAAAGGCCTTGCAAACCGACATGGCAACCGCG GACAAGGCCGTCGACAAACACAACCCCAACCCCGATTACAGCGGCGCCATCACCGGCCTGTCGGTTCAACTGCAACTGCA AAAAGACCTTTTTCCCGATGCTCAGGTGCCCACTGCCCAGCAAGTCTTCAACAACCAGCCTGATGAACTGCAAACGAAGA TCGCCGACTCCTACGTTCGCAATTTCAGCGAGGGCGGCGCTCTGAAACAACTGCTTGGCCAGAAAAAGTCTGACGCCGGT GAGTCTCTGCAAACCGCAGATAACCAGAAAGCGGCGTATGAAAGTGTGCTGCCCGCTGATTTCGTTAATGGTGAGCGTGA GAGCTACACGGCCAGCACCCTGTCCGAGCTGCAGAACTCCAAAAAAGGCCGCAAGTTGCTGGAGGGCAAGACCGATGAAG AGGGCGGCCCTTCGCTGGCCGCGCAGCTCGCCGAGCAAGGTATCGGAGGCAAGGCATTCAACTCGGTCATGGGCTTCGCG TCAGTGTCTGACAGGCTCGCCAGCGGTGACAAGCTGGGCGCGGCTCAGAGCATCATCGACAGTTCCAGGCTGGGCGCGGA GTCAATCAAGGGCGGCATAGACACCGGCGCGAAAATGATGGGTCGCGAGGCGTCCGCCGGCCTTGGTCGTCTGGGCGGAC AGATGATCGGCCGCGCTGTCGGTCTGGTTGCCGGCGAAGCCACAGGGCTTGCCGCAGGCGCAGCGCTGGGCGCTGCAATC CCGGTCATCGGCTGGGCCATCGACGGCGCCATGGCGTTGGGTTTTGGTATTTCGGCGATTATCGACGCAGTCAAAAAGCA CAAGGCGCAGAAGGCCTTCGATCATAACGTCGACCCGGTGCTGGATCAGTTCGGGATTGACAAGGCGCATTGA Protein sequence : MATMRISSSPSPALGSIVNQPTSGELAAETPLAKASLTQGSAGGGQAFVQFGQANDSPSSFSGTEQNGSSLMSLLTRSSS SDSTSSVDQDSEVSPMTSVSSTASASPTTASNPANAPSATDAAFLDNSEYSSPEALKRWEPMVANLPPEEREQAAKELNR PIAAAWMAREDGPNAEKAMAFINANPALKTAVDVGKDGGNADGKITNKDLKAFAKNMEKAADNADKDVAKYMEDNPGADP QSLEMVRSAAVMRANMPLATAADPHHAVGAADKTDVDGNVSAEGLKALIKSNPGLSGTLKQSSNMWSQAGFLSQVDEAGL TGRKKAAHSPDQVFDASNMSEWIRKSAPKNGGQFASMLSDAATLNSVAGIDISKLNAQVFEKPKAYTGAQKAAVMIKLQQ TQQSVIAGRDLRNTEKTEAGLNERIAQLQADPDVQEYLNKSIPEQERSLVRSDSALQKAVTEQAQNVNSGKALQTDMATA DKAVDKHNPNPDYSGAITGLSVQLQLQKDLFPDAQVPTAQQVFNNQPDELQTKIADSYVRNFSEGGALKQLLGQKKSDAG ESLQTADNQKAAYESVLPADFVNGERESYTASTLSELQNSKKGRKLLEGKTDEEGGPSLAAQLAEQGIGGKAFNSVMGFA SVSDRLASGDKLGAAQSIIDSSRLGAESIKGGIDTGAKMMGREASAGLGRLGGQMIGRAVGLVAGEATGLAAGAALGAAI PVIGWAIDGAMALGFGISAIIDAVKKHKAQKAFDHNVDPVLDQFGIDKAH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpK | AAF71497.1 | HrpK | Virulence | Hrp PAI | Protein | 0.0 | 100 |
| hrpK | AAF71482.2 | HrpK | Virulence | Hrp PAI | Protein | 0.0 | 98 |
| hrpK | AAA17653.1 | - | Virulence | Hrp PAI | Protein | 0.0 | 98 |
| hrpK | AAF71489.1 | HrpK | Virulence | Hrp PAI | Protein | 0.0 | 82 |
| hrpK1 | NP_791232.1 | type III helper protein HrpK1 | Virulence | Hrp PAI | Protein | 0.0 | 82 |
| hrpK | AAT96136.1 | HrpK | Virulence | T-PAI | Protein | 0.0 | 73 |
| hrpK | AAT96190.1 | HrpK | Virulence | T-PAI | Protein | 0.0 | 73 |
| hrpK | AAX39435.1 | HrpK | Not tested | Hrp PAI | Protein | 2e-112 | 43 |
