Gene Information

Name : Psyr_1217 (Psyr_1217)
Accession : YP_234309.1
Strain : Pseudomonas syringae B728a
Genome accession: NC_007005
Putative virulence/resistance : Virulence
Product : sigma-70 region 2:sigma-70 region 4
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 1374846 - 1375400 bp
Length : 555 bp
Strand : +
Note : -

DNA sequence : 
ATGCTCCCGAATCTTGTGATCCTTGATGCAACCGAACCACGCCAACCATCGTCGTCCGCCGGTATCCGGCAATTGACGGC
CGATCAGGTCCAGATGCTCAGAGCGTTCATCCAGAAGCGGGTGAAGAACGCTGATGATGTGGATGACATCCTGCAATGCG
TGTTTCTCGAGGCGTTACGCAATGAGCACAAGTTTCAGCACGCCAGCAAACCGCAAACCTGGTTATGTGGCATTGCGCTG
AATCTGATCCGCAATCACTTCCGCAAAATGTATCGCCAGCCCTATCAGGAAAGCTGGGAAGACGAAGTCCATACCGATCT
GGAGTGGAACGGCGATATCACCCATCAGGTAGACGGTCACCGACAGCTGGCACGCGTCATAGAGGCCATCGATTGCCTGC
CGACGAACATGCAGAAGGTTCTGGAAGTTTCGCTGGAAATGGACGGCAATTATCAGGAAACCGCCAACACGCTCGGTGTT
CCGATCGGCACTGTCCGCTCCCGACTGTCCCGGGCGCGGGTGCAGCTCAAGCAACACATAGACCCGTTCGCCTGA

Protein sequence : 
MLPNLVILDATEPRQPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIAL
NLIRNHFRKMYRQPYQESWEDEVHTDLEWNGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGV
PIGTVRSRLSRARVQLKQHIDPFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 3e-83 97
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 3e-83 97
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 3e-78 89
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 6e-79 89
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 1e-76 85
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 1e-76 85
hrpL AAR25629.1 RNA polymerase sigma factor HrpL Not tested Not named Protein 5e-36 52
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 9e-29 47
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 2e-27 46
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 5e-24 44