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Name : Psyr_1215 (Psyr_1215) Accession : YP_234307.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Virulence Product : Type III secretion protein HrcV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1371411 - 1373498 bp Length : 2088 bp Strand : - Note : - DNA sequence : ATGAACCGGGTCATCAACTTTCTGAACATGGTCGCGCTGTCGGCCATGCGCCGCTCGGAACTGGTCGGTGCGTTTTTTGT GATCGCCATCGTGTTCATGATGATCACGCCGCTGCCCACCGGGTTGATCGACGTGCTGATCGCCGTGAACATCTGTATTT CCTGCCTGCTGATCATGCTGGCGATGCACCTGCCCAGGCCACTGGCGTTCTCGACCTTCCCTGCCGTGCTGCTGCTGACC ACGATGTTTCGCCTGGCCCTGTCGGTTTCCACCACGCGGCTGATTCTGCTCAACCAGGACGCCGGGCACATCGTCGAGGC GTTCGGGCAGTTCGTGGTGGGCGGCAACCTGGCGGTGGGTCTGGTGATCTTCCTGATCCTGACGGTGGTCAACTTTCTGG TGATCACCAAAGGTTCGGAACGGGTCGCCGAAGTCGGTGCGCGGTTCACTCTGGATGCGATGCCCGGCAAGCAGATGTCC ATCGACAGTGACCTGCGCGCCAACCTGATCACCGTCCACGAGGCCCGTAAACGACGCGCCGAACTGAACAAGGAAAGCCA GTTGTTCGGTGCGATGGACGGCGCCATGAAATTCGTCAACGGCGATGCGATCGCCAGCCTGATCATTGTTGCCATCAACA TGATCGGCGGCATTTCCATCGGTGTGCTTCAGCACAACATGGCGGCGGGCGACGCCTTGCAGCTGTATACCGTACTGACC ATCGGTGACGGTCTGATCGCGCAGATTCCGGCCCTGCTGATCTCCGTGACCAGCGGCATGATCATCACCCGCGTGCCCAA CACCGAGGCGGGTGTGGAAGCCAACATCGGCCGCGAGATCGCCGAGCAGATTACCAGCCAGCCCAAGGCCTGGATCATCG CCTCGGTGGCCATGCTCGGCTTCGCTGCACTGCCGGGAATGCCGACCGGTGTTTTCATCACCATCGCGATCATCTGCGGT GCCGGTGGACTGCTGCAGTTGCAACGGGCAAAACCCAAGGCCGATGAGCAACGTACAGCCACTGTGGCGCCAGAAATGAA CGGCAAGGAAGACCTGCGTACTTTCTCGCCCAGCCGCCAGTTTGTGCTGCAATTCCACCCCGGTCAGGACAGCGCGCAGA TCGAAGCGCTGGTCAGCGAAATACGCAAGCGCCGCAACCGTCTGGTGGTGCAGTACGGCCTGACCCTGCCTTCGTTCATC ATCGAGCACGTCGATGACATTGCCCCGGACGAGTTTCGCTTCACCGTCTATGACGTACCGATGCTCAAGGCCACCTTTAC GCAGAGCCATGTCGCCGTGGAAGCGCGCCAGCTGGAAGGTGAAAACCTTCCGGCAGCCATCCCGGGCAATACCGACCGCC AGGAAGATCAATGGGTCTGGCTGCCTGCCGAGCAGTCCGGCGAATTGAACCCGGTCAGTTCCACGACCCTGATCATCGAA CGCATGGAGCGCGCATTGCAGTCCTGCGCACCGCAGTTCATCGGCTTGCAGGAAACCAAAGCCATCCTCGGCTGGCTGGA GTCCGAGCAACCGGAACTCGCTCAGGAAATGCAACGGGTCCTCACCCTGACGCGCTTCTCGGCTGTCCTGCAACGCCTGG CCTCGGAGTGTGTGCCGCTGCGGGCGATCCGGGTCATTGCCGAAACCCTGATCGAGCACTGTCAGCATGAACGCGATACC AATGTGCTGACCGACTATGTGCGCATTGCGCTCAAGTCGCAGATCTACCACCAGTACTGCGGTGCCGAAGGCCTGCAAGT GTGGCTGCTGACGCCGGAAAGCGAGGGGTTGTTGCGTGATGGCCTGCGCCAGACGCAAACCGAAACATTCTTCGCGCTGA GCAACGAGATCAGCCAGATGCTCGTGCAACAGCTGCACATTGCCTTCCCGGTACGAGCTCCCGAACAGGCGGTTCTGCTG GTGGCACAGGATCTGCGCAGCCCTCTGCGTACATTGTTGAGGGAGGAGTTCTACCATGTACCCGTACTATCTTTCGCGGA AATCAGCAACGCGGCCAAGGTCAAGGTCATGGGTCGATTCGACCTTGAAGACGATCTCGAGGCGCTGGACAACGAGCACG CTGCCTGA Protein sequence : MNRVINFLNMVALSAMRRSELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLT TMFRLALSVSTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMS IDSDLRANLITVHEARKRRAELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLT IGDGLIAQIPALLISVTSGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLGFAALPGMPTGVFITIAIICG AGGLLQLQRAKPKADEQRTATVAPEMNGKEDLRTFSPSRQFVLQFHPGQDSAQIEALVSEIRKRRNRLVVQYGLTLPSFI IEHVDDIAPDEFRFTVYDVPMLKATFTQSHVAVEARQLEGENLPAAIPGNTDRQEDQWVWLPAEQSGELNPVSSTTLIIE RMERALQSCAPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDT NVLTDYVRIALKSQIYHQYCGAEGLQVWLLTPESEGLLRDGLRQTQTETFFALSNEISQMLVQQLHIAFPVRAPEQAVLL VAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVMGRFDLEDDLEALDNEHAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 99 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 99 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 93 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 92 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 90 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 90 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 75 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 66 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 66 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 66 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 65 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Psyr_1215 | YP_234307.1 | Type III secretion protein HrcV | VFG0064 | Protein | 2e-130 | 42 |
| Psyr_1215 | YP_234307.1 | Type III secretion protein HrcV | VFG0384 | Protein | 1e-121 | 41 |
| Psyr_1215 | YP_234307.1 | Type III secretion protein HrcV | VFG0198 | Protein | 1e-109 | 41 |
