|
Name : Psyr_1051 (Psyr_1051) Accession : YP_234145.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Virulence Product : YD repeat-containing protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3209 EC number : - Position : 1186670 - 1189453 bp Length : 2784 bp Strand : + Note : - DNA sequence : ATGGTTGAACGCTCGATTGCCCTTCATCAGCACACGCCGGCATTACAGTTGGTGGACCCGCGTGGCTTGCCTGTGGCGTC GATTTTGCTGCATCGCTCAAGCATCGACCACGAGCCGGAACTCCGTACCAGCCAGGCGTCATTCGACCTTGCCAGTCGAC CTGTCAGCCATTGGGATCCGCGCCTGTGGGCTGATCGGGCACCTGCCAATCTCAGCGTCATTCATTCGCTCGGCGGTCGG GTTCTGGCCAGCGACAGTGTGGACGCTGGCTGGCGAGTGTTGCTGGCGGGGGAGGCCGGGCAGGTAGTGGAAGCCTGGGA CGCTCGGGGCGTTGTGCGACGTACTCAGTACGATGCGCTGCTAAGGCCCACCGAAGTTTTTGAAGATGAGCACTGCGTTG AGCGCTTGCTTTATGGCGGCCCTGACTCGACCGCATATAACCAGTGCGGTCAGTTGATTCGTCATGATGATCCGGCAGGC ACGCGGCTTGATGATGCGTACGGTCTTTCGGGAAGTGTTATTCGTCAAACGCGGCGCTTTCTGCACTCTGCCAATGAGCC TGACTGGCCCGCGTCGATGGCCGGGCGTGATGTCTTGCTGGAACCCGGCGACGGCGCAACCACCTGCTGGCACTACAACC CGTTGAACGAAACAATTCGGCAAATCGATGCGCAGGGCAATGTTCAGTTGCTGGATTACACCGTTGCGGGGCAGTTGAAA AACAGTCGTTTGCAACTGAACTGTCAGGCTGAACAGGTTTTGGTCAGTGCCATTCAATACGACGCGCAGCAGCGGGTGGT GTCGGAAACGGCTGGCAATGGTGTGATCAGCACGGCGCTCTATGCCACTGAAGACGGTCGTCTGCTGGCGTTGAGTGCCA GACGGGCCGATGGGCTGATGCTGCAGGACTTGCTGTACGACTACGACCCGGTCGGTAATGTCATCCGTATCGAGGACCGC GCTCAGTCAACGGCTTATAACCGCAATCAGCGCATTGATCCTGTTTCGGCCTATGGCTACGACACGCTGTACCAACTGAT CGAAGCCACAGGTCGGGAATCAGCGGTCGTCAATCACGGTCCGGTGTTTCCGGGTTTTCAAAGCCCTGCCGACCCTGCGC AACTGGCCAATTACACCCAGACCTACCGCTACGACGCGGGTGGCAACCTGCAACAGCTTACCCATACAGGCGCGCAGTCC CATTCGCGAACGCTGGTGACTGCGCGTTACAGCAACCGCAGTCTGCCGGTGATCAATGACCATATACCCGATGAAGCAGA AATCGCTGCAGCCTTCGACGCCAATGGCAATTTGCTCGCCCTGCAAGCCGGGCAAAACCTGAGCTGGGACCGGCGCAACC AGTTGCAGCAAGTGCGTCCAGTGGTTCGCGATGACGCTGCGGACGACAGCGAACGCTATATATACGACGCCAGCGGCCAG CGCCTGCGCAAGGTGCGTACCACGCAAGCCAAAACCATTACCCATACGGCCGATGTGCGTTACCTGCCCGGTCTTGAAAT CCGTACCGATACGGCCACTGGCGAAACCCTGCACGTTGTTGTGGCCCAGGCCGGGCGCAATAACGTGCGCGTGCTGCATT GGGCGTCTGGAAAGCCCGACGCGCTTGAAAATGATCAGACTCGCTACACAGTGAACGACCACCTGGGGTCCGGCACGCTT GAACTGGACGCGCAGGGGCAACTGATCAGTCAGGAAAGTTACTACCCGTTTGGCGGAACATCATGGTGGGCAGGTCGAAA TGCCATCGAAGCGAACTACAAGACCGTGCGTTACTCGGGCAAGGAACGCGATGCGACGGGGCTTTATTATTACGGGATGC GGTATTACGCGCCGTGGTTACAGCGCTGGATCAATCCGGACCCGGCTGGGCTTGAAGACGGGCTTAATCTATACGGTATG TTGAGAAACAATCCGCTCACCTTCATCGACGCTGCGGGAGAAGTCGCTGAAATCCCCAAGCATATTCATTACATCTGGTT GGGCGCTGCGGAACCACTGATGAAGCACCTGGGAGGGATTGAAAACACTTCTGTGCTGAACCCTGACTATCAATTGACGC TGCATCTGCATCTGGACCTGCGAAAGGGTGATGAAACGGAAATAGTTGCAGCGCTGCGCGGGCGAAGGAACGTCCATATT TCCGATCTCAGGGAAGAAGAATTTTTCAGAAAATTCCAGAAAACCCCGTCGTACGAGATTTATAAGGATTTGTATGGGGA TGACCCTCGACACTACTCTGCAGCCAGTGACGTGCTTCGCTACAGCTTGATCAACCATTATGGCGGTATTTATTCGGACA CGGACGACATGTTCAAGCGCGGTGTCAGGGATACCGATTTCATTCCCAAGCCCAAGAGGATTTTCACGATGCGCCCGACG GACACACCTTGGAACCGGGATGAAATCGTGATTAACAATAATTCGTTCGCGTCACCTGCCAACAATCCGGTGCTGAGCAC CTTGGAAAAGGAGATCGTCGACCGGTACAGCGTTTATCGTGAGACTGGCCTTGGCGCAGTGCTCAGTAGCACCGCCGATG TGAATGACAGGATGAGAATCGTTTCTGCTGTCACGGGGCCCAGGGTGTTCACAGAGGTATTGCTTAAAGAGGGGCGCGGG CTGAGCAAGCTGTTTTCAACGATGATCGATCACCATATTAAAGGTAAACCATTAAAAAACCCGAAGCGTTATCAGGCAGA AGCCCAAAAAAGAATGCCACTCTCGAACTTCATAAACATGGGAGGCAGCCACTCATGGAAATAG Protein sequence : MVERSIALHQHTPALQLVDPRGLPVASILLHRSSIDHEPELRTSQASFDLASRPVSHWDPRLWADRAPANLSVIHSLGGR VLASDSVDAGWRVLLAGEAGQVVEAWDARGVVRRTQYDALLRPTEVFEDEHCVERLLYGGPDSTAYNQCGQLIRHDDPAG TRLDDAYGLSGSVIRQTRRFLHSANEPDWPASMAGRDVLLEPGDGATTCWHYNPLNETIRQIDAQGNVQLLDYTVAGQLK NSRLQLNCQAEQVLVSAIQYDAQQRVVSETAGNGVISTALYATEDGRLLALSARRADGLMLQDLLYDYDPVGNVIRIEDR AQSTAYNRNQRIDPVSAYGYDTLYQLIEATGRESAVVNHGPVFPGFQSPADPAQLANYTQTYRYDAGGNLQQLTHTGAQS HSRTLVTARYSNRSLPVINDHIPDEAEIAAAFDANGNLLALQAGQNLSWDRRNQLQQVRPVVRDDAADDSERYIYDASGQ RLRKVRTTQAKTITHTADVRYLPGLEIRTDTATGETLHVVVAQAGRNNVRVLHWASGKPDALENDQTRYTVNDHLGSGTL ELDAQGQLISQESYYPFGGTSWWAGRNAIEANYKTVRYSGKERDATGLYYYGMRYYAPWLQRWINPDPAGLEDGLNLYGM LRNNPLTFIDAAGEVAEIPKHIHYIWLGAAEPLMKHLGGIENTSVLNPDYQLTLHLHLDLRKGDETEIVAALRGRRNVHI SDLREEEFFRKFQKTPSYEIYKDLYGDDPRHYSAASDVLRYSLINHYGGIYSDTDDMFKRGVRDTDFIPKPKRIFTMRPT DTPWNRDEIVINNNSFASPANNPVLSTLEKEIVDRYSVYRETGLGAVLSSTADVNDRMRIVSAVTGPRVFTEVLLKEGRG LSKLFSTMIDHHIKGKPLKNPKRYQAEAQKRMPLSNFINMGGSHSWK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| TccC3 | AAO17204.1 | TccC3 | Virulence | tcd island | Protein | 6e-101 | 42 |
| TccC2 | AAL18492.2 | TccC2 | Virulence | tcd island | Protein | 4e-99 | 41 |
| TccC4 | AAO17196.1 | TccC4 | Virulence | tcd island | Protein | 3e-99 | 41 |
