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Name : Psyr_0105 (Psyr_0105) Accession : YP_233217.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 116991 - 117812 bp Length : 822 bp Strand : - Note : - DNA sequence : GTGCTGGGCGTCAGTGCGACCGGCTTTCATTGCCACCAAGCTCGCTGTGCAGTTAATTGCCCTCAACGAGGTTTAAGCGA CGCAGCATTGCTCGTCCACATTCGCGCCGCTCATGCCCGCAGTCGTGGCAGCTACGGCTGGCCCAGGATCTGGCACGGTT TGCTGGCTGACGGCGTTCGCGTCGGCAAAGAGCGTGTGCAAAAGCTGATGCAGCTTCATGGTATTTGCGGCAAGGGCAAA CGACGTTTCAAAGTGACCACTGATAGCGCTCATGACTTACCCATTTCGGAGAACCTGCTGGATCGCCAGTTCGCCGTGAT GGAGCCTGACAGAGCTTGGGTGGGCGACATCACCTACATCCCGACAGATGAGGGCTGGCTGTTTCTGGCGGTAGTGGTAG ACCTGTTCAGTCGCCAGATCGTGGGCTGGTCGATGGACGAGCGCATGAAAAGCAGCCTGGTGATTGATGCGTTGCGCATG GCCTGGTTCAAGCGTCATCCACATAAGGCCTCCGGACTGCTGTTTCATAGTGATCGCGGGAGCCAGTACGCCAGCTTTGA TTTTCGTCATGTCCTTCAGGGCTACGGGATTGTCAGCTCGATGAGTCGACGGGGCAATTGCTGGGATAACGCGTGCAGCG AGACCGTGTTCGGCTCGTTGAAGGTGGAACGTCTGCATGGCTTGAAATTCAAAACCCGACGCGCTGCCAAGGACGAGGTC ATTAACTGGCTGCTGTGGTACAACCAGGAGCGCCTGCACTCGACGCTTCATTACGTAAGTCCGATGCAATACGAGCAGAA CTGGCAAAGGCAACAACCTTAG Protein sequence : MLGVSATGFHCHQARCAVNCPQRGLSDAALLVHIRAAHARSRGSYGWPRIWHGLLADGVRVGKERVQKLMQLHGICGKGK RRFKVTTDSAHDLPISENLLDRQFAVMEPDRAWVGDITYIPTDEGWLFLAVVVDLFSRQIVGWSMDERMKSSLVIDALRM AWFKRHPHKASGLLFHSDRGSQYASFDFRHVLQGYGIVSSMSRRGNCWDNACSETVFGSLKVERLHGLKFKTRRAAKDEV INWLLWYNQERLHSTLHYVSPMQYEQNWQRQQP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ECO111_3732 | YP_003236068.1 | putative IS3 transposase InsF | Not tested | LEE | Protein | 5e-36 | 45 |
| unnamed | AAL57581.1 | transposase 1 | Not tested | LEE | Protein | 4e-36 | 44 |
| unnamed | AAL57519.1 | transposase 1 | Not tested | LEE | Protein | 4e-36 | 44 |
| tnpI | AAD44751.1 | TnpI | Not tested | SHI-2 | Protein | 4e-45 | 41 |
| c3575 | NP_755450.1 | transposase insF | Not tested | PAI I CFT073 | Protein | 4e-45 | 41 |
| unnamed | AAB86997.1 | hypothetical 31 KD protein | Not tested | SHI-1 | Protein | 4e-45 | 41 |
| Z1134 | NP_286669.1 | hypothetical protein | Not tested | TAI | Protein | 1e-45 | 41 |
| hp1 | AAC61713.1 | Hp1 | Not tested | PAI I CFT073 | Protein | 3e-45 | 41 |
| Z1573 | NP_287077.1 | hypothetical protein | Not tested | TAI | Protein | 1e-45 | 41 |
| unnamed | AAF09022.1 | unknown | Not tested | SHI-O | Protein | 5e-45 | 41 |
| unnamed | AAF09030.1 | unknown | Not tested | SHI-O | Protein | 4e-45 | 41 |
| unnamed | AAC31485.1 | L0006 | Not tested | LEE | Protein | 2e-30 | 41 |
| ECs4537 | NP_312564.1 | hypothetical protein | Not tested | LEE | Protein | 2e-30 | 41 |
| overlap with orfA characteristic of IS3 family members | AGK06947.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 1e-31 | 41 |
| orfB | AGK06993.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 1e-31 | 41 |
| orfB | AGK07051.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 1e-31 | 41 |
| orfB | ACX47958.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 1e-31 | 41 |
| VPI2_0008c | ACA01825.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 1e-31 | 41 |
| VC1789 | NP_231424.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 2e-31 | 41 |
| orfB | AGK06910.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 1e-31 | 41 |
| orfB | YP_001217329.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 2e-31 | 41 |
| insF | CAC43414.1 | transposase of insertion element IS3 | Not tested | PAI III 536 | Protein | 1e-34 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Psyr_0105 | YP_233217.1 | integrase catalytic subunit | VFG1706 | Protein | 2e-45 | 41 |
| Psyr_0105 | YP_233217.1 | integrase catalytic subunit | VFG1122 | Protein | 7e-32 | 41 |
| Psyr_0105 | YP_233217.1 | integrase catalytic subunit | VFG1631 | Protein | 8e-35 | 41 |
