Gene Information

Name : xerD (cg1608)
Accession : YP_225705.1
Strain : Corynebacterium glutamicum ATCC 13032
Genome accession: NC_006958
Putative virulence/resistance : Unknown
Product : site-specific tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1497328 - 1498242 bp
Length : 915 bp
Strand : +
Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d

DNA sequence :
ATGAAGGCTCGCGTTTTAGCGAAAACATGGCTGACACATTTGGCCGTGGAGCGTGGCTTGTCGGCAAATACGCTGAGTAA
TTATCGGCGCGATGTGGAACGCTATTGCGACTGGCTCGAGGCAGCTGGGCTGGATGATATTCGTGATATCACCACCGCGC
ATGTGGAAAGTTATGTCAAAGACCTGCGCCGCGGGATTGATGGACAACAAGCGTTGTCTGCGTCCTCGGCAGGTCGCGCG
CTCATCGTCGCGCGCGGGTTGCACAAGTTTGCATTGATGGAGGGCGAGGTGGCTGCGGACGTTGCGGCTGATGTGTCGCC
ACCGGCCATGGGCCGGCATTTACCTGACACGCTCAGCATCAACGAGGTAGCCCTGCTTATCGACGCGATCCCACATTCAG
ATATCGCCACTCCCGTTGATCTCCGTGACCGAGCGCTGGTGGAATTACTTTATGGAACTGGCGCGCGTATCTCTGAGGCG
ATTGGGCTGGCAGTTGATGATGTGTCGGAAATGCCTGAAGTTCTTCGCATCACGGGCAAAGGTTCCAAACAACGGATCGT
GCCTTTTGGTTCGATGGCACAACAAGCGGTCCGGGAATATTTGGTCAGAGCCAGACCCGCGTTGAGTAAGGGGAAAAGCC
ATGCGCTTTTTCTCAACCAACGCGGCGGTCCGCTATCTCGGCAATCTGCGTGGGCAGTGCTGAAGAAAACGGTTGAGCGC
GCAGGTTTAGATAAAGATATTTCTCCCCACACCCTGCGGCACAGCTTTGCCACCCATCTCCTCGAAGGTGGCGCCGATGT
CCGTGTGGTGCAGGAACTCCTGGGTCATTCTTCTGTGACGACCACTCAGATTTACACGCACATCACAGCCGATAGCTTGC
GGGAAGTGTGGCGCGGGGCTCATCCTCGTGCGTGA

Protein sequence :
MKARVLAKTWLTHLAVERGLSANTLSNYRRDVERYCDWLEAAGLDDIRDITTAHVESYVKDLRRGIDGQQALSASSAGRA
LIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINEVALLIDAIPHSDIATPVDLRDRALVELLYGTGARISEA
IGLAVDDVSEMPEVLRITGKGSKQRIVPFGSMAQQAVREYLVRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVER
AGLDKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLREVWRGAHPRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 6e-41 44
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 6e-41 44