Gene Information

Name : ygiX (SC3121)
Accession : YP_218108.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3301407 - 3302219 bp
Length : 813 bp
Strand : +
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes

DNA sequence : 
ATGATTACTTTTCCCTTTCATGTCGTTTCAGATCCATTTAATAAGGTAATCCTTAACAACTTCTTAAGGCAAAAAAAGAA
TCTTTTTTTCTGTACATCGCCTGCGGCGACAAGGTTAACTGACGGTAACGCGAGTTACCGCAAGGAAGAACAGATGCGAA
TTTTACTGGTAGAAGATGACACACTTATTGGCGATGGCATAAAAGCGGGCCTGAGTAAAATGGGTTTCAGCATCGACTGG
TTTACCGAGGGACGCCCGGGCAAAGAGGCGCTTTACAGCGCGCCTTATGATGCGGTTATTTTAGATTTGACGCTGCCAGG
CATGGACGGACGGGATATTTTGCGCGAATGGCGCGAAAAGGGTAAACAGGAACCGGTGCTGATCCTGACGGCGCGCGACG
CGTTAGCAGAGCGTGTCGAGGGGCTACGTCTGGGCGCCGATGACTATTTATGTAAACCTTTCGCGCTCATTGAGGTCGCC
GCCCGTCTGGAGGCGCTGGTACGCCGCGCCAGCGGTCAGGCCAGTAGCGAATTGCACCACGGCCAGGTGACGCTCAATCC
AGGCAATCTCGTCGCGACGCTTGCCGGCGAACCACTGGCCCTAAAACCAAAAGAGTTCGCGTTGCTGGAACTCTTACTGC
GCAACAAAGGTCGCGTGCTGCCGCGCAAGCTTATTGAAGAGAAGCTGTATAACTGGGATGACGACGTGTCCAGCAATGCA
GTGGAAGTCCATGTTCATCATTTACGCCGCAAGCTCGGCAGCGAATTTATTCGCACCGTACACGGCATCGGCTACACCCT
GGGTGACGCATGA

Protein sequence : 
MITFPFHVVSDPFNKVILNNFLRQKKNLFFCTSPAATRLTDGNASYRKEEQMRILLVEDDTLIGDGIKAGLSKMGFSIDW
FTEGRPGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVA
ARLEALVRRASGQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYNWDDDVSSNA
VEVHVHHLRRKLGSEFIRTVHGIGYTLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-34 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_218108.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 2e-34 46
ygiX YP_218108.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 4e-30 43
ygiX YP_218108.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 7e-26 42
ygiX YP_218108.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 2e-30 41
ygiX YP_218108.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 1e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_218108.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 2e-34 47