Gene Information

Name : safB (SC0293)
Accession : YP_215280.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : fimbriae assembly chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 337447 - 338184 bp
Length : 738 bp
Strand : +
Note : IPR001829: Bacterial pili assembly chaperone

DNA sequence : 
ATGAAAATAGTTAATTTTGCTGTAATGGCGGTAGCTTTGTTCGCCACTAATTCTATGGTTTCAGTATATGCCGTCAACCA
GCAATTAAATTCAGCCACTAAATTATTCAGCGTGAAGCTGGGGGCTACACGAGTGATTTATCACGCTGGTACGGCTGGAG
CGACGCTCTCGGTGAGCAACCCGCAGAATTACCCTATTTTGGTTCAGTCTTCAGTCAAAGCAGCAGACAAAAGTTCGCCT
GCTCCCTTTTTGGTGATACCGCCTCTATTTCGTTTAGAAGCGAACCAGCAGAGTCAACTGCGTATTGTCCGTACTGGTGG
TGACATGCCAACGGATCGTGAGACTTTACAGTGGGTCTGTATAAAGGCGGTACCACCCGAAAATGAACCGTCGGATACAC
AGGCTAAGGGCGCGACCCTTGACCTCAATTTGTCCATCAACGCCTGTGATAAGCTGATTTTCCGCCCGGATGCCGTGAAG
GGGACGCCGGAAGATGTTGCAGGAAATTTAAGATGGGTGGAGACGGGCAACAAACTTAAGGTGGAGAACCCCACCCCGTT
TTACATGAATTTAGCCTCTGTCACAGTAGGGGGAAAGCCCATTACAGGGCTTGAGTATGTCCCCCCCTTTGCTGACAAAA
CACTAAATATGCCAGGTAGTGCCCATGGTGATATCGAGTGGAGAGTTATTACAGACTTTGGTGGTAAAAGTCATCCGTTC
CACTACGTTCTTAAATAA

Protein sequence : 
MKIVNFAVMAVALFATNSMVSVYAVNQQLNSATKLFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKSSP
APFLVIPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPENEPSDTQAKGATLDLNLSINACDKLIFRPDAVK
GTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGSAHGDIEWRVITDFGGKSHPF
HYVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
safB NP_454906.1 periplasmic fimbrial chaperone protein Not tested SPI-6 Protein 8e-105 90
afaB AAK16197.1 AfaB Virulence PAI-I AL862 Protein 4e-56 46
afaB ADD91742.1 putative AfaB-VIII periplasmic chaperone Not tested PAI-I AL862 Protein 4e-56 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
safB YP_215280.1 fimbriae assembly chaperone VFG0943 Protein 1e-52 49
safB YP_215280.1 fimbriae assembly chaperone VFG0850 Protein 3e-56 48
safB YP_215280.1 fimbriae assembly chaperone VFG0858 Protein 1e-52 48
safB YP_215280.1 fimbriae assembly chaperone VFG0852 Protein 8e-55 47