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Name : ldcC (SC0234) Accession : YP_215221.1 Strain : Salmonella enterica SC-B67 Genome accession: NC_006905 Putative virulence/resistance : Virulence Product : lysine decarboxylase 2, constitutive Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 272016 - 274157 bp Length : 2142 bp Strand : + Note : IPR000310: Orn/Lys/Arg decarboxylase, major region DNA sequence : ATGAACATCATCGCCATTATGGGGCCGCACGGGGTTTACTATAAAGATGAACCCATCAAGGAGCTTGAGCGTGCATTACA ATCCCTGGGATTTCAAATTATCTGGCCGCAAAATAGCGTTGACTTGTTGAAGTTTATTGAACATAACCCGCGCATCTGCG GCGTTATTTTTGACTGGGATGAATACAGTCTCGACCTTTGTAGCGAAATCAACCAGCTAAATGAATACCTTCCTCTCTAC GCCTTTATCAATACCAACTCCACGCTGGACGTTAGCGTTCACGATATGCGCATGGCGCTGTGGTTTTTTGAGTATGCATT GGGGCTGGCTGAAGATATCGCGACGCGCATTCATCAATATACAAACGAATATCTCGATAATATTACGCCGCCGTTTACCA AAGCGCTTTTTACCTACGCCAAAGAAGGAAAATATACCTTTTGTACGCCGGGTCATATGGCGGGAACGGCGTATCAGAAA AGCCCGCCAGGCTGTCTGTTTTATGACTTTTTTGGCGGCAATACCTTAAAGGCCGATGTGTCGATTTCGGTGACTGAACT AGGATCGTTGCTGGATCACACCGGGCCGCATCTGGAAGCGGAAGAGTATATCGCCCGTACTTTTGGCGCCGAGCAGAGTT ATATGGTGACGAACGGTACGTCGACCTCAAATAAAATTGTCGGTATGTATGCCGCGCCTGCGGGAAGTACGCTACTTATT GATCGTAATTGCCATAAATCGCTGGCGCATTTGCTGATGATGAGCGATGTGGTGCCTCTCTGGTTGAAGCCGACGCGCAA TGCGCTCGGTATTCTCGGCGGTATTCCTAAGCGTGAATTTACCCGCGACAGCATTGCGCGTAAGGTGGCGGAAACCGCGC AGGCGCAATGGCCGGTTCATGCGGTTATCACCAATTCGACTTACGATGGTCTGCTGTATAACACTAACTGGATCAAGCAG ATGCTGGACGTTCCCTCGATCCATTTTGATTCCGCCTGGGTACCCTATACCCATTTCCATCCGATCTACCAGGGGAAAAG CGGGATGAGCGGCGATCGGGTGCCCGGAAAAGTGATTTTCGAAACGCAATCCACCCATAAAATGCTGGCGGCTTTTTCGC AGGCGTCGCTTATTCATATCAAAGGGGAATATGACGAAGAGACGTTTAACGAAGCGTTTATGATGCACACTTCCACATCG CCGAGCTATCCCATTGTCGCCTCTATCGAGACCGCGGCGGCGATGCTGCGCGGCAATCTAGGGAAAAGATTGATTAATCG TTCGGTGGAGCGGGCGCTCCATTTTCGTAAAGAGGTACAGCGGCTACGTGAAGAGTCCGATAGCTGGTTCTTTGATATCT GGCAGCCGGAAGAGGTTGATGAGGCCGAATGCTGGCCGGTCACGCCGGGAGAAACCTGGCATGGCTTCGCCGATGCCGAT GACGATCATATGTTCCTCGATCCGGTTAAGGTGACAATCCTGACGCCGGGGATGGATGAACAGGGCAACATGAGCGAAGA GGGGATACCCGCCGCGCTGGTGGCGAAGTTCCTCGATGAGCGAGGCGTGGTGGTGGAAAAAACCGGGCCGTATAATCTGC TGTTTTTGTTCAGCATAGGGATTGATAAGACCCGTGCGATGGGGCTGCTGCGCGGACTGACGGAATTTAAACGGGCCTAT GATCTTAACCTGCGCGTCAAAAATATGTTGCCGGATCTGTATGCGGAAGATCCGGATTTTTATCGCAATATGCGCATTCA GGATCTGGCGCAGGGGATCCATAAACTGATCCGCCAGCACGATCTTCCGGGGCTGATGCTGCGGGCGTTCGAGGTTTTAC CGGAGATGATCATGACCCCGCACCAGGCCTGGCAGCGTCAGATCAAAGGTGAGGTGGAAACCGTGGCGCTCGATCAACTG CCAGGGCGCGTTTCCGCGAATATGATCCTGCCTTATCCGCCAGGCGTTCCGCTGTTGATGCCCGGCGAGAGGATCACGCA ACAGAGTCGGGCCGTGCTCGATTTTCTGCTGATGCTCTGTTCGATTGGCCAGCATTATCCCGGTTTTGAAACGGATATTC ACGGCGCGAAACGGAATGAAGACGGGGTGTACCAGGTACGAGTCTTAAAACACGCCTGTTAG Protein sequence : MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSEINQLNEYLPLY AFINTNSTLDVSVHDMRMALWFFEYALGLAEDIATRIHQYTNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQK SPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPAGSTLLI DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPKREFTRDSIARKVAETAQAQWPVHAVITNSTYDGLLYNTNWIKQ MLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGDRVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTS PSYPIVASIETAAAMLRGNLGKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEVDEAECWPVTPGETWHGFADAD DDHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFEVLPEMIMTPHQAWQRQIKGEVETVALDQL PGRVSANMILPYPPGVPLLMPGERITQQSRAVLDFLLMLCSIGQHYPGFETDIHGAKRNEDGVYQVRVLKHAC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 71 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_215221.1 | lysine decarboxylase 2, constitutive | VFG1670 | Protein | 0.0 | 61 |
