Gene Information

Name : ssaU (SC1443)
Accession : YP_216430.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : secretion system apparatus protein SsaU
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 1538119 - 1539177 bp
Length : 1059 bp
Strand : +
Note : member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli

DNA sequence : 
ATGAGCGAGAAAACAGAACAGCCTACAGAAAAGAAATTACGTGATGGCCGTAAGGAAGGGCAGGTTGTCAAAAGTATTGA
AATAACATCATTATTTCAGCTGATTGCGCTTTATTTGTATTTTCATTTCTTTACTGAAAAGATGATTTTGATACTGATTG
AGTCAATAACTTTCACATTACAATTAGTAAATAAACCATTTTCTTATGCATTAACGCAATTGAGTCATGCTTTAATAGAG
TCACTGACTTCTGCACTGCTGTTTCTGGGCGCTGGGGTAATAGTTGCTACTGTGGGTAGCGTGTTTCTTCAGGTGGGGGT
GGTTATTGCCAGCAAGGCCATAGGTTTTAAAAGCGAGCATATAAATCCGGTAAGTAATTTTAAGCAGATATTCTCTTTAC
ATAGCGTAGTAGAATTATGTAAATCCAGCCTGAAAGTTATCATGCTATCTCTTATCTTTGCTTTTTTCTTTTATTATTAT
GCCAGTACTTTTCGGGCGCTACCGTACTGTGGGTTAGCCTGTGGCCTGCTTGTGGTTTCTTCTTTAATAAAATGGTTATG
GGTTGGGGTGATGGCTTTTTATATCGTCGTTGGCATACTGGACTATTCTTTTCAATATTATAAGATTAGAAAAGATCTAA
AAATGAGTAAAGATGACGTAAAACAGGAGCATAAAGATCTGGAGGGCGATCCTCAAATGAAGACACGGCGTCGGGAAATG
CAGAGTGAAATACAAAGTGGGAGTTTAGCTCAATCTGTTAAACAATCTGTTGCGGTAGTGCGTAATCCAACGCATATTGC
GGTTGGTCTTGGCTATCATCCCACCGATATGCCAATACCACGCGTCCTGGAAAAAGGCAGTGATGCTCAAGCTAACTATA
TTGTTAACATCGCTGAACGCAACTGCATCCCCGTTGTTGAAAATGTTGAGCTGGCCCGCTCATTATTTTTTGAAGTGGAA
CGCGGAGATAAAATTCCTGAAACGTTATTTGAACCCGTTGCAGCCTTGTTACGTATGGTGATGAAGATAGATTATGCGCA
TTCTACCGAAACACCATAA

Protein sequence : 
MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQLVNKPFSYALTQLSHALIE
SLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYY
ASTFRALPYCGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
QSEIQSGSLAQSVKQSVAVVRNPTHIAVGLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVE
RGDKIPETLFEPVAALLRMVMKIDYAHSTETP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 4e-159 100
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 3e-157 99
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 4e-157 99
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 2e-157 99
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 2e-157 99
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 6e-71 49
escU AFO66307.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-49 41
escU AFO66403.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-49 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaU YP_216430.1 secretion system apparatus protein SsaU VFG0522 Protein 2e-157 99