Gene Information

Name : sseD (SC1422)
Accession : YP_216409.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : secretion system effector protein SseD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1524155 - 1524742 bp
Length : 588 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAGCGAGTAACGTAGCACTGGTATTACCAGCACCTTCCTTGTTAACGCCTTCTTCCAGTCAAGCTCCCTCCGGGGA
GGGAATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGACGAAGCTAATGGAGCTTGCCAAAAAGTTGCGCG
ATATCATGCGCAGCTATAACGTAGTAAAACAACGGCTGGGCTGGGAACTGCAAGTCAATGTTTTACAGACGCAAATGAAA
ACAATTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCAATGTTGTCGGGTGTACTGACGATAGGATTAGG
GGCCGTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGCCACACAGCTGGGGGCGTCATGGGCCTGGGGGCTG
GTGTAGCGCAACGTCAAAGTGATCAAAATAAAGCGATTGCCGACCTGAAACAAAATGGGGCCCAATCTTATAATAAATCC
CTGACGGAAATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTCACGGTTCTTGC
TGAAATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MEASNVALVLPAPSLLTPSSSQAPSGEGMGTESMLLLFDDIWTKLMELAKKLRDIMRSYNVVKQRLGWELQVNVLQTQMK
TIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQNKAIADLKQNGAQSYNKS
LTEIMEKATEIMQQIIGVGSSLVTVLAEILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 6e-66 100
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 9e-64 96
sseD AAC28882.1 SseD Virulence SPI-2 Protein 6e-63 96
sseD CAA12188.1 SseD Virulence SPI-2 Protein 6e-64 96
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 1e-63 95
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 1e-63 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sseD YP_216409.1 secretion system effector protein SseD VFG0502 Protein 3e-64 96