Gene Information

Name : sseC (SC1421)
Accession : YP_216408.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : secretion system effector protein SseC
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 1522685 - 1524139 bp
Length : 1455 bp
Strand : +
Note : -

DNA sequence : 
ATGAATCGAATTCACAGTAATAGCGACAGCGCCGCAGGAGTAACCGCCTTAACACATCATCACTTAAGCAATGTCAGTTG
CGTTTCCTCGGGTTCGCTGGGAAAGCGCCAGCATCGTGTGAATTCTACTTTTGGCGATGGCAACGCCGCGTGCCTGTTAT
CAGGGAAAATTAGTCTTCAGGAGGCAAGCAATGCGTTGAAGCAACTGCTTGATGCCGTACCCGGAAATCATAAGCGTCCA
TCATTGCCTGACTTTTTGCAGACCAATCCCGCGGTTTTATCAATGTTGATGACGACATTAATACTCAGCGTCTTTGGTAA
TAACGCTCAATCGTTATGCCAACAGCTTGAGCGGGCAACTGAGGTGCAAAATGCATTACGTGATAAGCAGGTAAAGGAGT
ATCAGGAGCAGATCCAGAAAGCGATAGAGCAGGAGGATAAAGCGCGTAAAGCGGGCATTTTTGGCGCTATTTTTGACTGG
ATTACCGGCATATTTGAAACTGTGATTGGCGCCTTAAAAGTTGTGGAGGGTTTTCTGTCCGGTAATCCCGCAGAAATGGC
TAGCGGCGTAGCTTATATAGCCGCAGGTTGTGCAGGAATGGTTAAAGCCGGAGCCGAAACGGCAATGATGTGCGGTGCTG
ACCACGATACCTGTCAGGCAATTATTGACGTGACAAGTAAGATTCAATTTGGTTGTGAAGCCGTCGCGCTGGCACTGGAT
GTTTTCCAGATTGGCCGTGCTTTTATGGCGACGAGAGGTTTATCTGGCGCAGCTGCAAAAGTGCTTGACTCCGGTTTTGG
CGAGGAAGTGGTTGAGCGTATGGTAGGCGCAGGGGAAGCAGAAATAGAGGAGTTGGCTGAAAAGTTTGGCGAAGAAGTGA
GTGAAAGTTTTCTCAAACAATTTGAGCCGCTTGAACGTGAAATGGTTATAGCGAATGAGATGGCAGAGGAGTCTGCCGAA
TTTTCTCGTGAGGTAGAAAATAATATGACGCGAAGCGCGGGAAAAAGCTTTACGAAAGAGGGGGTGAAAGCCATGGCAAA
AGAAGCGGCAAAAGAAGCCCTGGAAAAATATGCGCAAGAAGGGGAAAAATTTCTGTTAAAAAATTTTCGTAAGAAAGTTC
TCTGGAATATGTTCAAAAAAATCCTGTATGCCTTACTGAGGGATTGTTCATTTAAAGGCTTACAGGCTATCAGATGTGCA
ACCGAGGGCGCCAGTCAGATGAATACTGGCATGGTTAACACAGAAAAAGCGAAGCTCGAAAAGAAAATAGAGCAATTAAT
AACTCAGCAACGGTTTCTGGATTTCATAATGCAACAAACGGAAGACCAAAAAAAGATAGAACAAAAACGCTTAGAGGAGC
TTTATAAGAGTAGCGGTGCCGCGCTTAGAGATGTATTAGATACCATTGATCACTATAGTAGCGTTCAGGCGAGAATAGCT
GGCTGTCGCGCTTAA

Protein sequence : 
MNRIHSNSDSAAGVTALTHHHLSNVSCVSSGSLGKRQHRVNSTFGDGNAACLLSGKISLQEASNALKQLLDAVPGNHKRP
SLPDFLQTNPAVLSMLMTTLILSVFGNNAQSLCQQLERATEVQNALRDKQVKEYQEQIQKAIEQEDKARKAGIFGAIFDW
ITGIFETVIGALKVVEGFLSGNPAEMASGVAYIAAGCAGMVKAGAETAMMCGADHDTCQAIIDVTSKIQFGCEAVALALD
VFQIGRAFMATRGLSGAAAKVLDSGFGEEVVERMVGAGEAEIEELAEKFGEEVSESFLKQFEPLEREMVIANEMAEESAE
FSREVENNMTRSAGKSFTKEGVKAMAKEAAKEALEKYAQEGEKFLLKNFRKKVLWNMFKKILYALLRDCSFKGLQAIRCA
TEGASQMNTGMVNTEKAKLEKKIEQLITQQRFLDFIMQQTEDQKKIEQKRLEELYKSSGAALRDVLDTIDHYSSVQARIA
GCRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseC YP_216408.1 secretion system effector protein SseC Virulence SPI-2 Protein 0.0 100
sseC CAA12187.1 SseC Virulence SPI-2 Protein 0.0 96
sseC AAC28881.1 SseC Virulence SPI-2 Protein 0.0 96
sseC NP_460365.1 translocation machinery component Virulence SPI-2 Protein 0.0 96
sseC NP_805071.1 pathogenicity island effector protein Virulence SPI-2 Protein 0.0 96
sseC NP_456128.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 0.0 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sseC YP_216408.1 secretion system effector protein SseC VFG0501 Protein 0.0 96