Gene Information

Name : SC1420 (SC1420)
Accession : YP_216407.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : secretion system chaperone protein SscA
Function : -
COG functional category : S : Function unknown
COG ID : COG1729
EC number : -
Position : 1522209 - 1522682 bp
Length : 474 bp
Strand : +
Note : IPR005415: Gram-negative bacterial type III secretion SycD chaperone

DNA sequence : 
ATGAAAAAAGACCCGACCCTACAACAGGCACATGACACGATGCGATTTTTCCGGCGTGGCGGCTCGCTGCGTATGTTGTT
GGATGACGATGTTACACAGCCGCTTAATACTCTGTATCGCTATGCCACGCAGCTTATGGAGGTAAAAGAATTCGCCGGCG
CAGCGCGACTTTTTCAATTGCTGACGATATATGATGCCTGGTCATTTGACTACTGGTTTCGGTTAGGGGAATGCTGCCAG
GCTCAAAAACATTGGGGGGAAGCGATATACGCTTATGGACGCGCGGCACAAATTAAGATTGATGCACCGCAGGCGCCATG
GGCCGCAGCGGAATGCTATCTCGCGTGTGATAACGTCTGTTATGCAATCAAAGCGTTAAAGGCCGTGGTGCGTATTTGCG
GCGAGGTCAGTGAACATCAAATTCTCAGACTGCGTGCAGAAAAGATGTTACAGCAACTTTCTGACAGGAGCTAA

Protein sequence : 
MKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTLYRYATQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ
AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRLRAEKMLQQLSDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 3e-70 100
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 2e-69 99
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 2e-69 99
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 1e-69 99
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 1e-69 99
sscA CAA12186.1 SscA Virulence SPI-2 Protein 1e-69 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SC1420 YP_216407.1 secretion system chaperone protein SscA VFG0500 Protein 4e-70 99