Gene Information

Name : ssrB (SC1412)
Accession : YP_216399.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : secretion system transcriptonal activator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 1513910 - 1514548 bp
Length : 639 bp
Strand : -
Note : IPR000792: Bacterial regulatory protein, LuxR family; IPR001789: Response regulator receiver

DNA sequence : 
ATGAAAGAATATAAGATCTTATTAGTAGACGATCATGAAATCATCATTAACGGCATTATGAATGCCTTATTACCCTGGCC
TCATTTTAAAATTGTAGAGCATGTTAAAAATGGTCTTGAGGTTTATAATGCCTGTTGCGCATACGAGCCTGACATACTTA
TCCTTGATCTTAGCTTACCTGGCATCAATGGCCTGGATATCATTCCTCAATTACATCAGCGTTGGCCAGCAATGAATATT
CTGGTTTACACAGCATACCAACAAGAGTATATGACCATTAAAACTTTAGCCGCAGGTGCTAATGGCTATGTTTTAAAAAG
CAGTAGTCAGCAAGTTCTGTTAGCGGCATTGCAAACAGTAGCAGTAAACAAGCGTTACATTGACCCGACGTTGAATCGGG
AAGCTATCCTGGCTGAATTAAAGGCTGACACGACCAATCATCAACTGCTTACTTTGCGCGAGCGTCAGGTTCTTAAACTT
ATTGACGAGGGGTATACCAATCATGGGATCAGCGAAAAGCTACATATCAGTATAAAAACCGTCGAAACACATCGGATGAA
TATGATGAGAAAGCTACAGGTTCATAAAGTGACAGAGTTACTTAACTGTGCCCGAAGAATGAGGTTAATAGAGTATTAA

Protein sequence : 
MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLPGINGLDIIPQLHQRWPAMNI
LVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELKADTTNHQLLTLRERQVLKL
IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLIEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssrB YP_216399.1 secretion system transcriptonal activator Virulence SPI-2 Protein 2e-97 100
ssrB NP_460356.1 transcriptional activator Virulence SPI-2 Protein 5e-97 99
ssrB CAB09344.1 SsrB Virulence SPI-2 Protein 4e-88 99
ssrB NP_456137.1 putative two-component response regulator Virulence SPI-2 Protein 5e-97 99
ssrB NP_805062.1 two-component response regulator Virulence SPI-2 Protein 5e-97 99
YPO0255 YP_002345335.1 two-component response regulator Not tested Not named Protein 8e-48 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssrB YP_216399.1 secretion system transcriptonal activator VFG0492 Protein 2e-97 99