Gene Information

Name : ycjj (SC1400)
Accession : YP_216387.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : amino acid permease
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0531
EC number : -
Position : 1499484 - 1500827 bp
Length : 1344 bp
Strand : -
Note : IPR002293: Amino acid/polyamine transporter family I

DNA sequence : 
ATGAAAAAAGTCAAAAAATTGTCTCTTACCGATTTAGTGCTTTATGGTCTGGTGTTTATGGTGCCTATCGCGCCAGTCTC
TCTTTATGGCGTCGTTTATAATCTTTCGCACGGTATGGTTGCGCTGGTTTATATTATTGGCGCGATCGCGATGTTTTTTA
CCGCGTACAGCTACTCTACCTTATCGCAACATATCTCCTCGTCGGGTTCGGCCTATGCGTATGCTGGCGTATGCATTAAT
CCCGCCGTAGGGTTTCTGACCGGATGGATATTACTGCTGGATTATCTTTTGTTCCCTACGCTCGTGGCAGTGCTGGGCGG
CGTCGCGGTCCACGCTATTTTACCGCAAATCCCGGTCTGGGTCTGGCCGTTGATTTATGTGGCTATTGGCACCGGAGTCA
ACTATCTCGGGATACAGCAAACGGCGAAATTCGATAAGTTACTGGTCTTTATTCAACTCGGTATTCTGGCGATTTTCGTG
CTACTCATTGTCCGTCTGATGCTGCTGGACAGTAGTCAGATAACGCTTTCCTTCCGGCCTTTTTTCGATTCACAGTGGTT
CACCCCAGGGCTCATCGCGACGGCGATTTCGGTGGCTGCGCTGAACTTTCTCGGCTTTGACGCTATCAGTACATTAAGTG
AAGAAAGCGAAGGCGGGGGACGCGCCGTCAGTAAAGCAACGCTGTTGGCGTTAGTTTTGGCGACGGTACTGTTTATTATC
GTTGTGGCGTTTGCGGCGTTCGCCACCGGTAACGTCGACCGCTTCGCGGAAGGTAATGCGACGAATGAAGCATTTTTCAC
CATTGCCGGCAACGTTGGCGGTATCTGGCTCAAAGTGGCGTTTTCCATCATTGTGGCGTTTGTGTGCGCCGTCGGCAACA
TTATTACCGCGCAAACGGCGGTGTCCAGAGTGCTATTTTCAATGGGGCGCGACCGAATGTTGCCCGCCTTCCTCGCTCAC
GTCCATACCACGCGTAAAACGCCGGATTATGCCATTCTGTTTACCGGCGGCGTCACCCTGCTGCTCAGCTACCTGTTTTC
CGGCAAGATTGAATCTATCTCCACGCTGGTGAACTTTGGCGCGCTTTTCGCTTTTTTTGTCGTGAACCTGTGTGTGTTTA
TCCTGTTCAATTTCCGGATGAAAGCCCAGCGGCGCATTTTCGCCCATGTCATTTCGCCGATCATGGGGATGATCGTCATC
GGCTACGTCTGTTTAAACATGAACATTCACGCTCTGATACTCGGAATTAGCTGGGCGGCGATCGGGATAGCGATACTGTG
CTATCGAAAAGCACACAACCAAAACATCGCCATCGACCTGGAAGGCAAAAAGTTGCTCGATTGA

Protein sequence : 
MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQHISSSGSAYAYAGVCIN
PAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFV
LLIVRLMLLDSSQITLSFRPFFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRVLFSMGRDRMLPAFLAH
VHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVI
GYVCLNMNIHALILGISWAAIGIAILCYRKAHNQNIAIDLEGKKLLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ycjj YP_216387.1 amino acid permease Not tested SPI-2 Protein 1e-178 100
orf48 NP_460344.1 amino acid permease Not tested SPI-2 Protein 1e-178 100
t1247 NP_805052.1 amino acid permease Not tested SPI-2 Protein 8e-177 99
ORF48 CAA68204.1 amino acid permease YeeF like protein Not tested SPI-2 Protein 1e-174 99
STY1743 NP_456146.1 putative amino acid permease Not tested SPI-2 Protein 8e-177 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ycjj YP_216387.1 amino acid permease VFG0480 Protein 5e-179 100