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Name : cmlA (SC052) Accession : YP_209357.1 Strain : Genome accession: NC_006856 Putative virulence/resistance : Resistance Product : chloramphenicol resistance protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 40607 - 41866 bp Length : 1260 bp Strand : - Note : IPR001411: tetracycline resistance protein TetB; IPR001958: tetracycline resistance protein; IPR004734: multidrug resistance protein; IPR004812: drug resistance transporter Bcr/CflA subfamily; IPR005828: general substrate transporter; IPR007114: major fac DNA sequence : GTGAGCTCAAAAAACTTTAGTTGGCGGTACTCCCTTGCCGCCACGGTGTTGTTGTTATCACCGTTCGATTTATTGGCATC ACTCGGCATGGACATGTACTTGCCAGCAGTGCCGTTTATGCCAAACGCGCTTGGTACGACAGCGAGCACAATTCAGCTTA CGCTGACAACGTACTTGGTCATGATTGGTGCCGGTCAGCTCTTGTTTGGACCGCTATCGGACCGACTGGGGCGCCGCCCC GTTCTACTGGGAGGTGGCCTCGCCTACGTTGTGGCGTCAATGGGCCTCGCTCTTACGTCATCGGCTGAAGTCTTTCTGGG GCTTCGGATTCTTCAGGCTTGTGGTGCCTCGGCGTGCCTTGTTTCCACATTTGCAACAGTACGTGACATTTACGCAGGTC GCGAGGAAAGTAATGTCATTTACGGCATACTCGGATCCATGCTGGCCATGGTCCCGGCGGTAGGCCCATTGCTCGGAGCG CTCGTCGACATGTGGCTTGGGTGGCGGGCTATCTTTGCGTTTCTAGGTTTGGGCATGATCGCTGCATCTGCAGCAGCGTG GCGATTCTGGCCTGAAACCCGGGTGCAACGAGTTGCGGGCTTGCAATGGTCGCAGCTGCTACTCCCCGTTAAGTGCCTGA ACTTCTGGTTGTACACGTTGTGTTACGCCGCTGGAATGGGTAGCTTCTTCGTCTTTTTCTCCATTGCGCCCGGACTAATG ATGGGCAGGCAAGGTGTGTCTCAGCTTGGCTTCAGCCTGCTGTTCGCCACAGTGGCAATTGCCATGGTGTTTACGGCTCG TTTTATGGGGCGTGTGATACCCAAGTGGGGCAGCCCAAGTGTCTTGCGAATGGGAATGGGATGCCTGATAGCTGGAGCAG TATTGCTTGCCATCACCGAAATATGGGCTTTGCAGTCCGTGTTAGGCTTTATTGCTCCAATGTGGCTAGTGGGTATTGGT GTCGCCACAGCGGTATCTGTGGCGCCCAATGGCGCTCTTCGAGGATTCGACCATGTTGCTGGAACGGTCACGGCAGTCTA CTTCTGCTTGGGCGGTGTACTGCTAGGAAGCATCGGAACGTTGATCATTTCGCTGTTGCCGCGCAACACGGCTTGGCCGG TTGTCGTGTACTGTTTGACCCTTGCAACAGTCGTGCTCGGTCTGTCTTGTGTTTCCCGAGTGAAGGGCTCTCGCGGCCAG GGGGAGCATGATGTGGTCGCGCTACAAAGTGCGGAAAGTACATCAAATCCCAATCGTTGA Protein sequence : MSSKNFSWRYSLAATVLLLSPFDLLASLGMDMYLPAVPFMPNALGTTASTIQLTLTTYLVMIGAGQLLFGPLSDRLGRRP VLLGGGLAYVVASMGLALTSSAEVFLGLRILQACGASACLVSTFATVRDIYAGREESNVIYGILGSMLAMVPAVGPLLGA LVDMWLGWRAIFAFLGLGMIAASAAAWRFWPETRVQRVAGLQWSQLLLPVKCLNFWLYTLCYAAGMGSFFVFFSIAPGLM MGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLAITEIWALQSVLGFIAPMWLVGIG VATAVSVAPNGALRGFDHVAGTVTAVYFCLGGVLLGSIGTLIISLLPRNTAWPVVVYCLTLATVVLGLSCVSRVKGSRGQ GEHDVVALQSAESTSNPNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cml(A)5 | ACY75522.1 | CmLA(5) | Not tested | Tn6060 | Protein | 5e-159 | 99 |
| cmlA5 | CAJ77046.1 | Chloramphenicol resistance protein | Not tested | AbaR1 | Protein | 7e-159 | 99 |
| cmlA9 | ABZ01840.1 | CmlA9 chloramphenicol efflux protein | Not tested | SGI2 | Protein | 4e-62 | 50 |
| cmlA | CAJ77032.1 | chloramphenicol and florfenicol resistance protein | Not tested | AbaR1 | Protein | 4e-62 | 50 |
| floR | YP_005176183.1 | florfenicol / chloramphenicol efflux protein | Not tested | ICEPmu1 | Protein | 5e-62 | 50 |
| flo | AAK02049.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 3e-63 | 49 |
| floRc | AGK06972.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 3e-63 | 49 |
| floRc | AGK07102.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 3e-63 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| cmlA | YP_209357.1 | chloramphenicol resistance protein | DQ522237.1.gene4.p01 | Protein | 3e-159 | 99 |
| cmlA | YP_209357.1 | chloramphenicol resistance protein | NC_010410.6003586.p0 | Protein | 3e-159 | 99 |
| cmlA | YP_209357.1 | chloramphenicol resistance protein | DQ984668.gene.p01 | Protein | 3e-159 | 99 |
| cmlA | YP_209357.1 | chloramphenicol resistance protein | AF294653.1.gene4.p01 | Protein | 9e-160 | 99 |
| cmlA | YP_209357.1 | chloramphenicol resistance protein | AF156486.gene.p01 | Protein | 4e-156 | 98 |
