Gene Information

Name : istB (SC168)
Accession : YP_209465.1
Strain :
Genome accession: NC_006856
Putative virulence/resistance : Unknown
Product : transposase/IS protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 126643 - 127422 bp
Length : 780 bp
Strand : -
Note : IPR001270: Chaperonin clpA/B; IPR002611: IstB-like ATP-binding protein; IPR003593: AAA ATPase

DNA sequence :
ATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGCCGAACAGCTCCAGCTGGACAGTCTTATCGGCGCAGCGCCGGC
GCTGTCGCAACAGGCGGTGGATCAGGAATGGAGCTACATGGACTTCCTGGAGCACCTGTTACATGAGGAGAAACTGGCCC
GGCATCAGCGTAAACAGGCGATGTACACGCGGATGGCAGCCTTCCCGGCGGTAAAGACGTTCGAGGAGTACGACTTCACC
TTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCTGCGATCCCTGAGCTTCATAGAGCGTAACGAAAACATCGTGTT
GCTGGGGCCATCGGGCGTGGGAAAAACGCATCTGGCGATAGCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGTTC
GCTTCACAACAGCAGCGGACCTGCTGCTACAGCTGTCCACTTCACAGCGTCAGGGCCGTTACAAAACGACTCTCAATCGT
GGTGTCATGGCCCCGAAGCTGCTTATCATCGATGAAATAGGTTATCTGCCGTTCAGTCAGGAGGAAGCCAAGCTGTTCTT
CCAGGTCATCGCCAAACGTTACGAGAAGAGCGCGATGATCCTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGACGT
TCGCCGGTGATGCAGCGCTGACATCGGCGATGCTGGACCGGATCTTACATCACTCACACGTCGTGCAAATAAAAGGGGAA
AGCTATCGACTGAAGCAGAAACGAAAGGCCGGGGTTATAGCTGAAGCTAATCCTGAGTAA

Protein sequence :
MVELQHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT
FATGAPQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNR
GVMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGE
SYRLKQKRKAGVIAEANPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 4e-85 98
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 4e-118 97
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 4e-118 97
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 4e-118 97
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 6e-118 97
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 4e-118 97
unnamed CAA21402.1 - Not tested HPI Protein 6e-118 97
api84 CAF28558.1 putative transposase Not tested YAPI Protein 4e-118 97
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 4e-118 97
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 4e-118 97
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 4e-118 97
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-118 97
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 3e-117 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
istB YP_209465.1 transposase/IS protein VFG1460 Protein 2e-85 98
istB YP_209465.1 transposase/IS protein VFG1627 Protein 2e-118 97
istB YP_209465.1 transposase/IS protein VFG1606 Protein 2e-118 97
istB YP_209465.1 transposase/IS protein VFG1515 Protein 2e-118 97
istB YP_209465.1 transposase/IS protein VFG1663 Protein 2e-117 96