Gene Information

Name : rlgA (SCV49)
Accession : YP_209303.1
Strain :
Genome accession: NC_006855
Putative virulence/resistance : Unknown
Product : integrase-like protein Y4LS
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1961
EC number : -
Position : 45646 - 46278 bp
Length : 633 bp
Strand : +
Note : IPR006118: site-specific recombinase; IPR006119: resolvase, N-terminal

DNA sequence : 
TTGGGTTGTTTTTATCCCATTCCGGTGTTACGTTTTCATCATCTAGAGTTAAACGAGACAGTTTTCACCATTATGGCACT
TTACGGCTATGCCCGCGTTTCAACCAGCGATCAGGATCTTACTCTGCAGACACAAATTCTCCGCGCTGCTGGTTGTGAAA
TTATTCGTGCAGAAAAAGCCAGCGGAAGCGGCCGGACCGGAAGGAGCGAGTTGCAGCTGCTGCTGGAGTTCCTGCGCCCT
GGTGATACGTTGATGGTGACACGCGTGGATCGCCTGGCCCGCAGCATTAAGGACCTGCAGGACATTGTGTATGCCCTGAA
TCAACAGGGCGTAACGCTCAGGGCAACAGAACAGCCAGTGGACACGCGTTCAGCTGCAGGCAAAGCCTTCCTCGATATGC
TGGGTGTTTTCGCTGAGTTTGAAACCAATCTGAGACGTGAACGCCAGATGGAAGGCATTGCCGCGGCGAAAGCCAGGGGC
GTATACCGGGGAAGGAAACCGTCCATAGATCCTGCTGAGGTATATCGTCTGTATACCATTGAGAAGATGGGAGCCACAGC
CATCGCCCGCCAGCTCGGGATTGGGAGGGCGTCAGTCTACTGGGCGCTGGAAAATTATGAGCAGCCGGCGTAG

Protein sequence : 
MGCFYPIPVLRFHHLELNETVFTIMALYGYARVSTSDQDLTLQTQILRAAGCEIIRAEKASGSGRTGRSELQLLLEFLRP
GDTLMVTRVDRLARSIKDLQDIVYALNQQGVTLRATEQPVDTRSAAGKAFLDMLGVFAEFETNLRRERQMEGIAAAKARG
VYRGRKPSIDPAEVYRLYTIEKMGATAIARQLGIGRASVYWALENYEQPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
res AGF35025.1 resolvase Not tested SGI1 Protein 1e-24 44
res AGF35059.1 resolvase Not tested SGI1 Protein 1e-24 44
res AGK06929.1 resolvase Not tested SGI1 Protein 1e-24 44
res AGK06966.1 resolvase Not tested SGI1 Protein 1e-24 44
res AGK07012.1 resolvase Not tested SGI1 Protein 1e-24 44
res AGK07070.1 resolvase Not tested SGI1 Protein 1e-24 44
res AAK02044.1 resolvase Not tested SGI1 Protein 1e-24 44
tnpR ACD85600.1 TnpR resolvase Not tested SGI2 Protein 1e-24 44
res AGF34985.1 resolvase Not tested SGI1 Protein 1e-24 44
tnpR ACF06154.1 resolvase Not tested Tn5036-like Protein 4e-21 42
tnpR YP_006098373.1 transposon Tn21 resolvase Not tested Tn2411 Protein 2e-19 41
tnpR AAL08439.1 resolvase TnpR Not tested SRL Protein 1e-19 41
tnpR AFV53121.1 Tn21 resolvase Not tested AbGRI2-1 Protein 1e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rlgA YP_209303.1 integrase-like protein Y4LS VFG1030 Protein 5e-20 41