Gene Information

Name : pefB (SCV23)
Accession : YP_209277.1
Strain :
Genome accession: NC_006855
Putative virulence/resistance : Virulence
Product : major pilu subunit operon regulatory protein PapB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 18410 - 18712 bp
Length : 303 bp
Strand : +
Note : IPR004356: P pili regulatory PapB protein

DNA sequence : 
ATGATGCTGAACAGAAAAGATGCTGATTATTATTTGGGCAAAGAAATCATGCTGGCCAGAATAAGAAGAGGGGCGCTGAT
ACCTGCAAAAGTAAATGAGGAACATTTCTGGTTACTCATCGGTATATCATCCATTCACAGCGAGAAGATTATTCAGGCAC
TCAGGGACTACCTTGTTTTTGGTGTGTCCAGAAAGGATGTCTGTGAACGCTATGAAGTGAACAACGGGTATTTCAGTACC
AGTCTGAACCGCCTGTCACGTATCAGTCAGGCCGCAGCGCAGATGGTTGTTTACTATTCATAA

Protein sequence : 
MMLNRKDADYYLGKEIMLARIRRGALIPAKVNEEHFWLLIGISSIHSEKIIQALRDYLVFGVSRKDVCERYEVNNGYFST
SLNRLSRISQAAAQMVVYYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papB AAL67418.1 PapB Virulence PAI II CFT073 Protein 6e-21 55
papB AAZ04473.1 P pilus protein Virulence PAI I APEC-O1 Protein 6e-21 55
APECO1_3518 YP_854257.1 PapB-like protein Virulence PAI I APEC-O1 Protein 9e-21 55
papB YP_002414018.1 pap operon regulatory protein PapB Not tested Not named Protein 9e-21 55
papB AAC61719.1 PapB Virulence PAI I CFT073 Protein 6e-21 55
sfaB CAC43422.1 SfaB protein Virulence PAI III 536 Protein 2e-21 54
prfB CAD42032.1 PrfB protein Virulence PAI II 536 Protein 5e-20 53
pixB CAE85162.1 PixB protein Not tested PAI V 536 Protein 2e-12 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pefB YP_209277.1 major pilu subunit operon regulatory protein PapB VFG0436 Protein 1e-42 100
pefB YP_209277.1 major pilu subunit operon regulatory protein PapB VFG1641 Protein 7e-22 54
pefB YP_209277.1 major pilu subunit operon regulatory protein PapB VFG1551 Protein 2e-20 53
pefB YP_209277.1 major pilu subunit operon regulatory protein PapB VFG0942 Protein 3e-18 49