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Name : tcpC (VF_A0872) Accession : YP_206830.1 Strain : Genome accession: NC_006841 Putative virulence/resistance : Virulence Product : toxin coregulated pilus outer membrane protein TcpC Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4964 EC number : - Position : 983724 - 985178 bp Length : 1455 bp Strand : - Note : - DNA sequence : ATGAAGAAAAAAGCATTGATTTTGATTATATCTATATTATCTGGATGCTCTTCAACTAATATGAGTGATAAAAATGAGAA CTCATTAGATCTTATAGTGGATAAAGAAATAGAATCTCGTAACTTGAGAACATCTAATTTCTCAATTTTTGATAATTCAT ATTATTCCGTTTACGAAAATAATAATGATTCAAAAAACAAAGATATTCCGGTAAGTTTTTATAGTGTTGAACCAATGACC ATTTATGAAGTACTAGATATCATTGAATTACAGTTTAAAATGCCTTACTACATGTCCGATATTCTTTCTTTAACTGAAGA AGAGAAGAAACTCTACAATGACAGAAAAAAAATAACATTTGATGGTAGCTTAGATAATTTTTTTAAATATCTAGGTAAGG TTTATGGTCTGGATATCGTTGTTGATGACTTCGATGCTTTAAAAGTCAGTTATTTTCAAACAAAGATGTATAGCTTAGAC CAATTCATTGATGGTAACAAATCTTCGGCTTCTCTTTCTGTCGGCAGTGGTGCTACCTCTGGTGGTTTTTCTGCTTCATC TGAGAGTTCTGTTGAAAGTGATACTTGGGAAAAAATTGAAAATTATTTAGATGATGTAGTCGGAGAAAATGGGAGTTCAA CTATTTTAGAAGACTTTTCCCTTGTTAAAATTACTGCTAGGCCATGGATTATCTCAGAAGTCGATCAATTATTTGATAGA TTGAAAGCTGAGAGTCAAATGCAAGTTTCTGTACAATATCGAATTATCAGTTTAAGCAAATCAAAATTGAGTCAATTAGC TGCGAAGTTTGGTTTAGATTCAAAAGGTAATGACTTTACTATAACGAGTGAATTGGTTGATTCTGTCGCACTTAATGCTG CTGGTGGTGGATTAAGTTTTGCGAAAAGGTCTGTAAGTGGAAGACTAGATGCAGTAGTCAAATATTTAGCTCAAGATGTC GTTAGTGAAGGCCATTTCGTTGGATTACCAAATAGGATTATGCCGATAAATCTAACTACAACCTCATCGTATATTTCTGA AGTAGAAAAAGTAGATAATGAAAATGTAGATAAGTCAACTACATCATTGAAAACGTCTGAAATTAAAACTGGCTTGAGCA TGTTGATTTTACCAAAAGTTTTAGAGGATGGTCGGATTCAATTAACATCTGGTTTTACTAAGAAGCAGTTGATCGCGATG GATACTGTAAGCGGCGTTCAATTACCAACAGTTGATGAGAATGAAACATTATCAACGGTAACTTTAGATTCAGGAGATGT GGAATTAATAACCTTATATAAAGGAAATTCTAATAATTCAGCTCAAGCAGCTCAATTACTTGGTTTAGGTCAAACTTCAT CTGAAGACGATCAAGTAATCGCGGTACTAATTGGTGCGGATAGTTACAAACTAGCTAGCTCTGTCTCGAAACGAGGATTA TATGATAATAGATGA Protein sequence : MKKKALILIISILSGCSSTNMSDKNENSLDLIVDKEIESRNLRTSNFSIFDNSYYSVYENNNDSKNKDIPVSFYSVEPMT IYEVLDIIELQFKMPYYMSDILSLTEEEKKLYNDRKKITFDGSLDNFFKYLGKVYGLDIVVDDFDALKVSYFQTKMYSLD QFIDGNKSSASLSVGSGATSGGFSASSESSVESDTWEKIENYLDDVVGENGSSTILEDFSLVKITARPWIISEVDQLFDR LKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFTITSELVDSVALNAAGGGLSFAKRSVSGRLDAVVKYLAQDV VSEGHFVGLPNRIMPINLTTTSSYISEVEKVDNENVDKSTTSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQLIAM DTVSGVQLPTVDENETLSTVTLDSGDVELITLYKGNSNNSAQAAQLLGLGQTSSEDDQVIAVLIGADSYKLASSVSKRGL YDNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tcpC | YP_001216312.1 | toxin co-regulated pilus biosynthesis outer membrane protein C | Virulence | VPI-1 | Protein | 1e-72 | 41 |
| VC0831 | NP_230479.1 | toxin co-regulated pilus biosynthesis outer membrane protein C | Virulence | VPI-1 | Protein | 2e-73 | 41 |
| tcpC | AAK20758.1 | toxin-coregulated pilus biosynthesis outer membrane protein C (lipoprotein) | Virulence | VPI | Protein | 8e-73 | 41 |
| tcpC (lipoprotein) | CAA45458.1 | - | Virulence | VPI | Protein | 6e-73 | 41 |
| tcpC | AAK20788.1 | toxin-coregulated pilus biosynthesis outer membrane protein C (lipoprotein) | Virulence | VPI | Protein | 1e-73 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tcpC | YP_206830.1 | toxin coregulated pilus outer membrane protein TcpC | VFG0094 | Protein | 8e-74 | 41 |
