Gene Information

Name : VF_A0663 (VF_A0663)
Accession : YP_206621.1
Strain :
Genome accession: NC_006841
Putative virulence/resistance : Unknown
Product : XerC/CodV family integrase/recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 735018 - 736001 bp
Length : 984 bp
Strand : +
Note : -

DNA sequence : 
ATGGATATCCCATTAGATCTTAAACCAGATTCACAACGCTTCACCGATCAACTTCGAATTTTCATTCGAACACGTGCGCT
AGCCTATAATACAGAGAAACAATACATATATTGGATAAGTTGCTTTATTCGTCATAACAACTACACATCAAAAGACGAAA
TTAACGCCTTTGATATACCAGCCTACCTTGAGCACTTAGTCGTAAAACAGAACGTATCGCCAAATACCCAAAAAACCGCG
TTAAACGCACTCATATTTTTATGTCGCGAATACCTACAACAATCAGTCGATAACCTTGAATTTAAACGTTCTAAAAAAGC
CACTAAATTGCCAACTGTATTTACTCATGGTGAAGCCATCTCCGTTATAAATGAACTTAACCACCCCACTAAGCTGATTG
CACAACTTATGTATGGGAGCGGTTTACGAATAAACGAAGCATTAAGGCTAAGAGTAGATGACATCGATCTTATCCATAAA
ACCATCACCATAAGAAATGGGAAAGGTAATAAAGACAGGACTACTGTACTACCCGAGAGCATCATTCCAGAGCTTAAAAC
GCAACTCGAGTTTGTAAAACAACAACATAAAATGGATGCAATAAACGGGGATGATGAAGTTTATCTACCTAATGCCATTG
CAAAAAAATACCCTCACAGAGCAAAAAGTTATGGTTGGCAATATGTGTTTCCTTCAAAACAGATCAGCAAAGATCCACGT
TCAGGTCAGCATCGTCGACACCACATGTTAGATAGAAGCGTTCAAAAACAAGTAACCAATGCAATAAAAAAACTTGAGAT
AGATAAGAAAGCCAGCAGCCACACATTTAGGCATAGCTTTGCGACACGAATTTTAGAACGGGGTGGAGATCTAAGGACAA
TACAAGAATTATTGGGTCATTCTGATATCAAAACGACCCAAATTTATACTCACGTAATAGGCTTACACTTCTCAGGAACG
AAAAGCCCATTAGACTTTGATTAA

Protein sequence : 
MDIPLDLKPDSQRFTDQLRIFIRTRALAYNTEKQYIYWISCFIRHNNYTSKDEINAFDIPAYLEHLVVKQNVSPNTQKTA
LNALIFLCREYLQQSVDNLEFKRSKKATKLPTVFTHGEAISVINELNHPTKLIAQLMYGSGLRINEALRLRVDDIDLIHK
TITIRNGKGNKDRTTVLPESIIPELKTQLEFVKQQHKMDAINGDDEVYLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPR
SGQHRRHHMLDRSVQKQVTNAIKKLEIDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHVIGLHFSGT
KSPLDFD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 1e-47 45
int1 YP_005160012.1 integrase Not tested Not named Protein 6e-51 44
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 3e-56 43
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 4e-56 43
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 4e-56 43
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 3e-56 43
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 3e-56 43
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 4e-56 43
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-56 43
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 3e-56 43
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 3e-56 43
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 4e-56 43
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-56 43
intI1 AAK02045.1 integrase Not tested SGI1 Protein 3e-56 43
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 4e-56 43
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-56 43
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 3e-56 43
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 4e-56 43
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-56 43
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 3e-56 43
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 4e-56 43
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 4e-56 43
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 3e-56 43
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 4e-56 43
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 3e-56 43
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 4e-56 43
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 4e-56 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VF_A0663 YP_206621.1 XerC/CodV family integrase/recombinase VFG1028 Protein 2e-56 43