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Name : lysS (VF_0453) Accession : YP_203836.1 Strain : Genome accession: NC_006840 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 482369 - 483874 bp Length : 1506 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGAACAAGTACAACTAGATGAAAACAAACTGATTGCTGAACGTCGTGGTAAATTAGACCATATTCGTCAAGCATG TAAAGCTAATGGCCACCCAAATGACTTCCGTCGTGATAGCCTAGCGGGTGATCTTCAAGCTGAATTTGGTGAAAAGACCA AAGAAGAGCTAGAAGAACTGAACCACGTTGTTGCAATTGCTGGCCGTGTTATGGCTAAGCGTGGTCCTTTCTTATTGATT CAAGAAGTATCTGGTAAGATCCAAGCTTACGCAGCAAAAGAAGTTCAAAAAGAACTAAAAGACAAATACCAAGGTTTGGA TATCGGTGACATCATCGGTGTTAAAGGTGCACTTCATAAGTCAGGTAAAGGTGATCTTTACGTGAACATGGAAGAGTATG TACTGCTAACAAAAGCATTACGTCCATTACCAGAAAAATTCCATGGTTTAACAGACCAAGAGATGCGTTACCGTCAACGT TACGTAGATCTAATCGTAAATGATGACTCACGTCATGCATTTATCGTTCGTTCTAAAGTGGTTGCTGCTATCCGTAACTT CATGGTTGATAAAGGCTTCATGGAAGTTGAAACTCCTATGATGCACGTTATCCCTGGCGGTGCTTCTGCGCGTCCATTCG TAACGCACCATAATGCACTTGATGTTGATATGTACCTACGTATTGCTCCTGAGCTTTACTTAAAACGTCTAGTTGTTGGT GGTTTTGAACGTGTATTCGAAATTAACCGTAACTTCCGTAACGAAGGTCTATCTCCACGTCATAACCCAGAATTCACAAT GATGGAATTCTACATGGCGTATGCAGATTACAACGATCTAATGGACCTTACAGAAGAAATGCTATCTACAGTAGCAACAT CTGTTTTAGGTAGCGACAAAATGCCTTATGGTGAGCACACGGTTGATTTTGGTGGCAAATACGCTCGTATGAGCATGTTA GATGCGATCAAACAATACAACCCTGATCACGCAGAGATCCAAGCGCTAACGTATGAAGGCGTTAAAGATCGCGATCTAAT GGTATCTATTGCTAAATCTGTACATGTTGACGTTGAAAGCTTCTGGACATGTGGTCAGCTTCTTGAAGAGATCTTCGGTG AAACTGCTGAACCTAAGCTAATGCAACCTACATTCATTACTGAATACCCAGCAGATATTTCTCCATTAGCACGTCGTAAC GATGACAATGATTTCATTACTGATCGTTTTGAATTCTTCATTGGTGGTCGTGAAGTAGCAAATGGTTTCTCTGAGCTGAA TGATGCACAAGATCAAGACGAGCGTTTTAAAGCGCAAGTTAATGCTAAAGAATCTGGTGATGATGAAGCTATGTACTACG ATGCAGACTACATCACAGCTCTTGAGCATGGTTTACCACCAACTGCTGGTCAAGGTATCGGTATTGACCGTTTAGTTATG CTATTAACTAACACGCACACAATTCGTGACGTTATTTTATTCCCATCAATGCGTCCACAAGCGTAA Protein sequence : MTEQVQLDENKLIAERRGKLDHIRQACKANGHPNDFRRDSLAGDLQAEFGEKTKEELEELNHVVAIAGRVMAKRGPFLLI QEVSGKIQAYAAKEVQKELKDKYQGLDIGDIIGVKGALHKSGKGDLYVNMEEYVLLTKALRPLPEKFHGLTDQEMRYRQR YVDLIVNDDSRHAFIVRSKVVAAIRNFMVDKGFMEVETPMMHVIPGGASARPFVTHHNALDVDMYLRIAPELYLKRLVVG GFERVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYNDLMDLTEEMLSTVATSVLGSDKMPYGEHTVDFGGKYARMSML DAIKQYNPDHAEIQALTYEGVKDRDLMVSIAKSVHVDVESFWTCGQLLEEIFGETAEPKLMQPTFITEYPADISPLARRN DDNDFITDRFEFFIGGREVANGFSELNDAQDQDERFKAQVNAKESGDDEAMYYDADYITALEHGLPPTAGQGIGIDRLVM LLTNTHTIRDVILFPSMRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-134 | 58 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-80 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_203836.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-134 | 58 |
