|
Name : pilB (VF_2186) Accession : YP_205569.1 Strain : Genome accession: NC_006840 Putative virulence/resistance : Virulence Product : pilus assembly protein PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2456927 - 2458615 bp Length : 1689 bp Strand : + Note : - DNA sequence : ATGCACACCAACCTCGCCTCTATCTTGCGTCAAGCTGAGTTAATCAGTGCGACGCAAGAAAGCAGTATCATAGAGTCAGT TCAAGCAGAAACGCACACTGTGCCTTCTGCTCTTTTAGCTCAGGGGATATTTACTCCTGATGAACTCATAAGTCACCTTG CTCAAATCTTTGGCCTTGATGTGATCAACGTGACTCAATTTGATTATGCCACCACTTGTCAAAAGCTGGGACTGCGCGAT CTCATTACTCGCTATCAAGCTCTTCCTGTAAGTCACGACAGTTGCACGATTCGTCTTGCTGTAGCTGATCCAAGTATTGC TCAAATAGAAGATGATTTTCGTTTTACTAGCGGAAAACAAATTGAATTAGTACTTGCAGATCAAGGACAAATCCAAGCAG CCATTCGACGCGTCTACGGTGCAGGATTATCTGCAAATGACAATCAACATAAAGAGATAACCCAAGATGAGTTAGCTTCA TTAGTGGATGTCTCACTTGATGAGATAAGAGCTACAGAAGATCTCAGCCAAGACGATGCCCCCGTCACTCGCTTTATTAA CCAAATTTTATTAGAAGCGGTGCGTAAAGGAGTATCAGATATTCATTTTGAACCCTACGAAGATAATTATCGTGTGCGTT TTCGCTGCGATGGGATCTTAGTTGAAAACAGCCGTCCATCCGCTCACTTAAGTCGTCGTTTATCTGCTCGCCTTAAAATC ATGGCAAAATTAGACATTGCAGAACGTCGTCTACCACAAGATGGGCGTATTAAACTCAAATTAAACAGTACCACTTCGAT TGATATGCGAGTTTCTTCACTGCCAACTTTATGGGGTGAGAAAATCGTACTGCGTTTATTAGACAGCAGTGCTGCTAATT TAAATATTGATAAACTTGGCTATAGCGATCAACAAAAAGCCCTATATTTAGAAGCCCTAAAACGCCCTCAAGGCATGATA TTAATGACAGGCCCTACAGGCAGTGGGAAAACCGTCTCTCTTTATTCTGGTCTTAATATTCTCAACACCACGGAACAAAA CATTTCAACGGCGGAAGATCCAGTTGAGATCAACTTAAATGGGATCAACCAAGTTCAAGTTAACCCTAAAATCGGCCTTA CTTTCGCTCACGCTTTACGATCTTTTTTACGCCAAGATCCAGATATCGTCATGGTAGGTGAAATACGAGATCTCGAAACC GCTGAGATTGCTGTCAAAGCAGCTCAAACCGGGCACTTAGTTCTTTCTACCCTACATACAAATTCCGCAGCAGAAACCGT CGTTCGACTAGGCAACATGGGGATTGAAAACTTTAACTTAGCTTCCTCTCTTAGTTTGATTATTGCGCAACGGCTGGCTC GTCGTCTCTGCAATTTATGCAAGCAAGAAGATCATTTAAGTGATGAGTTGCGAGAAGAATATAACATTGCACCTTCAGCC ATTATTTATCAAGCCAATAAAGAAGGTTGCAATGAGTGCACTCATGGTTACTCAGGGCGTATTGGTATTTATGAAGTGAT GCCGTTCACCCGAGAACTGTCTGTTGCCATTTTAAAAGGTGCAACCGTTAGACAAATAGAACAAATCGCCATTCAACAAG GTATGGATAACCTAAAAACCTCAGGAATTAAACGATTAGAAGATGGCACCACCAGCTTACAAGAACTAAACCGTGTGCTC TATTTTTAA Protein sequence : MHTNLASILRQAELISATQESSIIESVQAETHTVPSALLAQGIFTPDELISHLAQIFGLDVINVTQFDYATTCQKLGLRD LITRYQALPVSHDSCTIRLAVADPSIAQIEDDFRFTSGKQIELVLADQGQIQAAIRRVYGAGLSANDNQHKEITQDELAS LVDVSLDEIRATEDLSQDDAPVTRFINQILLEAVRKGVSDIHFEPYEDNYRVRFRCDGILVENSRPSAHLSRRLSARLKI MAKLDIAERRLPQDGRIKLKLNSTTSIDMRVSSLPTLWGEKIVLRLLDSSAANLNIDKLGYSDQQKALYLEALKRPQGMI LMTGPTGSGKTVSLYSGLNILNTTEQNISTAEDPVEINLNGINQVQVNPKIGLTFAHALRSFLRQDPDIVMVGEIRDLET AEIAVKAAQTGHLVLSTLHTNSAAETVVRLGNMGIENFNLASSLSLIIAQRLARRLCNLCKQEDHLSDELREEYNIAPSA IIYQANKEGCNECTHGYSGRIGIYEVMPFTRELSVAILKGATVRQIEQIAIQQGMDNLKTSGIKRLEDGTTSLQELNRVL YF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-85 | 48 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-85 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_205569.1 | pilus assembly protein PilB | VFG0112 | Protein | 2e-125 | 51 |
| pilB | YP_205569.1 | pilus assembly protein PilB | VFG1880 | Protein | 3e-114 | 50 |
| pilB | YP_205569.1 | pilus assembly protein PilB | VFG2048 | Protein | 4e-86 | 49 |
| pilB | YP_205569.1 | pilus assembly protein PilB | VFG0233 | Protein | 2e-104 | 45 |
| pilB | YP_205569.1 | pilus assembly protein PilB | VFG0182 | Protein | 9e-85 | 44 |
| pilB | YP_205569.1 | pilus assembly protein PilB | VFG1876 | Protein | 4e-79 | 44 |
