Gene Information

Name : gacA (XOO3077)
Accession : YP_201716.1
Strain : Xanthomonas oryzae KACC10331
Genome accession: NC_006834
Putative virulence/resistance : Virulence
Product : LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 3309787 - 3310506 bp
Length : 720 bp
Strand : -
Note : -

DNA sequence :
TTGCATCGAGCTTGCCCTGAATTATTCACGGAGATAGGCTGCACCAGCCAGCAGCTAGCGAGGAAAACAAGGATGACCAT
CAGAGTTTTTCTGATCGACGATCATGCGCTCGTGCGTACAGGCATGAAGATGATTCTGTCCAAGGAAGTGGATGTCTGTG
TGGTCGGCGAGGCAGAAAGCGGCGAAGCCGCATTGCCGCAAATTCGTCAACTCAAGCCGGACATCGTGCTGTGCGACCTG
CATTTGCCTGGCGTCAGTGGCCTGGAAATCACCGAGCGCATCGTCAAGGGCGATTACGGCACCCGCGTCATCATTGTCTC
CGTGCTCGAAGACGGCCCGCTCCCCAAGCGACTGCTCGAAGCGGGTGCGTCCGGCTATGTGGGCAAGGGCGGCGACGCGC
ACGAGCTGCTGCGCGCGGTACGTGAAGTCGCGCTGGGGCGGCGTTATCTCGGCAACACGATCGCGCAGAACCTGGCGCTA
TCCAATCTGGAAGGGGGGGGCTCACCGTTCGATGCATTGTCCCCACGCGAGCTGGAAGTGGCCTTGCTGTTGACTCAGGG
TCTGCGCCAGGAAGACATCGCCAAGCGCCTGAACCTCAGCGCCAAGACCATCAATACGCACAAAGCGCGCTTGTTCGAAA
AGGTCGGCATCCAGGACAACATCGCGCTGGCACGGTTGGCCAACCAGTATGGCCTGACCGATCCCTCCAGGGTGCTGTGA

Protein sequence :
MHRACPELFTEIGCTSQQLARKTRMTIRVFLIDDHALVRTGMKMILSKEVDVCVVGEAESGEAALPQIRQLKPDIVLCDL
HLPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLPKRLLEAGASGYVGKGGDAHELLRAVREVALGRRYLGNTIAQNLAL
SNLEGGGSPFDALSPRELEVALLLTQGLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALARLANQYGLTDPSRVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 5e-40 45
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 5e-40 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gacA YP_201716.1 LuxR family transcriptional regulator VFG1889 Protein 2e-40 47