Gene Information

Name : ycfV (XOO2304)
Accession : YP_200943.1
Strain : Xanthomonas oryzae KACC10331
Genome accession: NC_006834
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2440603 - 2441337 bp
Length : 735 bp
Strand : -
Note : -

DNA sequence : 
ATGAATGAGATCCGGGAAGCGGTTGTGCAAACACCAGAACAGGCAACTGCGGTCATTCGCGCCGAGGCGCTGGCCAAGAC
CTACGCCGAAGGCAAGATGCGCACGCCGGTATTCGATGGCCTGGATCTATCGGTGGCGACCGGCGAAACCGTGGCGATCG
TCGGCGCTTCCGGTGCCGGCAAGAGCACCTTGCTGCATCTGCTCGGGGGGTTGGATATTCCGACCGCGGGCGAAGTGTAT
GTAGCGGGTGAGCGCATGTCGGCGCTGTCCGATGCACAGCGCGGCAAGCTACGCAATCAGTCGCTTGGCTTTGTGTATCA
GTTCCACCACCTGTTACCCGAATTCACCGCGCTGGAAAACGTGATGATGCCGGTGCTGCTGTCTGGCAAAAACGTGGCCG
TCGCCAAAGGGCAGGCGCTGCAATTGTTGGAATCGGTCGGGCTCGGGCATCGTATCGACCACAAGCCCAGTGAACTGTCG
GGCGGCGAGCGTCAACGCTGTGCCGTGGCGCGTGCACTGGTCAACAAGCCCGGCTGCGTGTTGGGCGACGAGCCCACCGG
CAACCTCGACGACAAGACCGCGGGCACGGTGTTCGAGCTGATGCTGGAGCTCAATCGTGCCCAGCGCACCAGCCTGGTCT
TGGTGACGCACGACCGTGGCTTGGCACGGCGCCTGGACCGCGTCCTGGAGCTGCATCAAGGAAAGCTGCGGGAACTGGCG
CCGTCTGCGGTGTAA

Protein sequence : 
MNEIREAVVQTPEQATAVIRAEALAKTYAEGKMRTPVFDGLDLSVATGETVAIVGASGAGKSTLLHLLGGLDIPTAGEVY
VAGERMSALSDAQRGKLRNQSLGFVYQFHHLLPEFTALENVMMPVLLSGKNVAVAKGQALQLLESVGLGHRIDHKPSELS
GGERQRCAVARALVNKPGCVLGDEPTGNLDDKTAGTVFELMLELNRAQRTSLVLVTHDRGLARRLDRVLELHQGKLRELA
PSAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-29 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ycfV YP_200943.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-38 44
ycfV YP_200943.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-30 42