Gene Information

Name : dnaB (XOO1525)
Accession : YP_200164.1
Strain : Xanthomonas oryzae KACC10331
Genome accession: NC_006834
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 1554853 - 1556436 bp
Length : 1584 bp
Strand : +
Note : unwinds double stranded DNA

DNA sequence :
GTGGCGCAACGGTCTTGGCATCTGCGACAACCGGCGCGTGGAACGCTGATACACCGCCTATACACCAGTTATCCACAGAG
TTGTGCATGGTCGTCGGCGTCGCCGATGACTATGCTTCCTGCCCTTGTCTGCCCGCGTCAGGTTTGTCTGTCCATGTCCG
CTCGTCCTGGTTTCCGTTCCAAGCGCAATCGTGATCGCGACGACGACGATTACGATCGTCCCGAGCCGCGTCTGGACCAG
CTGCGGGTGCCGCCGCATTCGGTCGAGGCCGAGCAGGCTGTGCTGGGTGGCTTGATGCTGGCGCCGGACGCGTTCGACCG
GGTCAACGATCAGCTCACCGAAAACGACTTCTACCGACGCGATCATCGGCTGATCTACCGCGCGATTCGCGAATTGAACC
AAAAAGATCGCCCATTCGACGCAGTGACCCTGGGCGAATGGTTCGAATCGCAGGGCAAGCTGGAGCAGGTGGGCGATGGC
GCCTACCTGATCGAGCTGGCCAGCACCACGCCGTCGGCAGCCAACATCGCCGCGTATGCGGAAATCGTGCGCGACAAGGC
GGTGCTGCGGCAGTTGATCGATGTGGGCACCACGATCGTCAACGATGGCTTCCAGCCAGAGGGCCGCGACAGCATCGAGT
TGCTGTCCTCTGCGGAAAAGGCCGTGTTCAAGATCGCCGAAGCCGGCGCGCGCGGGCGGGCCGATTTCGTGGCGATGCCC
GGCGCCTTGAAGGATGCCTTCGAAGAGCTGCGCAACCGTTTCGAAAACGGCGGCAACATCACCGGCTTGCCGACCGGCTA
TAACGATTTCGATGCGATGACGGCCGGCCTGCAGCCGACCGACTTGATCATCCTGGCCGCGCGTCCGGCCATGGGCAAGA
CCACCTTCGCGCTGAACATTGCCGAATACGCCGCGATCAAGTCCAAGAAGGGCGTGGCGGTGTTTTCGATGGAAATGTCG
GCCTCGCAGCTGGCGATGCGCCTGATCTCCTCCAACGGTCGCATCAATGCGCAGCGTCTGCGGACCGGTGCGCTGGAAGA
CGAGGATTGGGCACGCGTGACCGGTGCGATCAAGATGCTGAAAGAAACCAAGATCTTCATCGACGACACCCCGGGCGTGT
CGCCGGAAGTGCTGCGTTCCAAGTGCCGCCGCCTCAAGCGCGAACACGACCTGGGCTTGATCGTCATCGACTACCTGCAG
CTGATGTCGGTGCCCGGCAACAGCGAAAACCGCGCGACCGAAATTTCGGAAATTTCGCGTGGCCTGAAGGGGCTTGCGAA
GGAACTCAACGTGCCGGTGATCGCGTTGTCGCAGCTCAACCGCTCGCTGGAAACGCGGACCGATAAGCGCCCGGTGATGG
CCGACTTGCGCGAATCCGGCGCAATCGAGCAGGACGCGGACATGATCGTCTTTATCTACCGCGACGATTACTACAACAAG
GAAAATTCGCCGGACAAGGGCCTGGCCGAGATCATCATCGGCAAGCACCGCGGCGGCCCGACCGGCTCGTGCAAGCTCAA
GTTCTTCGGTGAGTACACCCGCTTCGACAATCTGGCGCACGACTCGGTGGGCAGTTTCGAGTAA

Protein sequence :
MAQRSWHLRQPARGTLIHRLYTSYPQSCAWSSASPMTMLPALVCPRQVCLSMSARPGFRSKRNRDRDDDDYDRPEPRLDQ
LRVPPHSVEAEQAVLGGLMLAPDAFDRVNDQLTENDFYRRDHRLIYRAIRELNQKDRPFDAVTLGEWFESQGKLEQVGDG
AYLIELASTTPSAANIAAYAEIVRDKAVLRQLIDVGTTIVNDGFQPEGRDSIELLSSAEKAVFKIAEAGARGRADFVAMP
GALKDAFEELRNRFENGGNITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS
ASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQ
LMSVPGNSENRATEISEISRGLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYNK
ENSPDKGLAEIIIGKHRGGPTGSCKLKFFGEYTRFDNLAHDSVGSFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 9e-95 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 7e-87 47
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 2e-86 47
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 4e-79 46
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 5e-84 46
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 3e-81 45
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 7e-75 45
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 7e-75 45
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 1e-67 41